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Telomere-to-telomere genome assembly of matsutake (Tricholoma matsutake)
Here, we report the first telomere-to-telomere genome assembly of matsutake (Tricholoma matsutake), which consists of 13 sequences (spanning 161.0 Mb) and a 76 kb circular mitochondrial genome. All the 13 sequences were supported with telomeric repeats at the ends. GC-rich regions are located at the...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10211490/ https://www.ncbi.nlm.nih.gov/pubmed/37186136 http://dx.doi.org/10.1093/dnares/dsad006 |
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author | Kurokochi, Hiroyuki Tajima, Naoyuki Sato, Mitsuhiko P Yoshitake, Kazutoshi Asakawa, Shuichi Isobe, Sachiko Shirasawa, Kenta |
author_facet | Kurokochi, Hiroyuki Tajima, Naoyuki Sato, Mitsuhiko P Yoshitake, Kazutoshi Asakawa, Shuichi Isobe, Sachiko Shirasawa, Kenta |
author_sort | Kurokochi, Hiroyuki |
collection | PubMed |
description | Here, we report the first telomere-to-telomere genome assembly of matsutake (Tricholoma matsutake), which consists of 13 sequences (spanning 161.0 Mb) and a 76 kb circular mitochondrial genome. All the 13 sequences were supported with telomeric repeats at the ends. GC-rich regions are located at the middle of the sequences and are enriched with long interspersed nuclear elements (LINEs). Repetitive sequences including long-terminal repeats (LTRs) and LINEs occupy 71.6% of the genome. A total of 21,887 potential protein-coding genes were predicted. The genomic data reported in this study served not only matsutake gene sequences but also genome structures and intergenic sequences. The information gained would be a great reference for exploring the genetics, genomics, and evolutionary study of matsutake in the future, and ultimately facilitate the conservation of this vulnerable genetic resource. |
format | Online Article Text |
id | pubmed-10211490 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-102114902023-05-26 Telomere-to-telomere genome assembly of matsutake (Tricholoma matsutake) Kurokochi, Hiroyuki Tajima, Naoyuki Sato, Mitsuhiko P Yoshitake, Kazutoshi Asakawa, Shuichi Isobe, Sachiko Shirasawa, Kenta DNA Res Resource Article: Genomes Explored Here, we report the first telomere-to-telomere genome assembly of matsutake (Tricholoma matsutake), which consists of 13 sequences (spanning 161.0 Mb) and a 76 kb circular mitochondrial genome. All the 13 sequences were supported with telomeric repeats at the ends. GC-rich regions are located at the middle of the sequences and are enriched with long interspersed nuclear elements (LINEs). Repetitive sequences including long-terminal repeats (LTRs) and LINEs occupy 71.6% of the genome. A total of 21,887 potential protein-coding genes were predicted. The genomic data reported in this study served not only matsutake gene sequences but also genome structures and intergenic sequences. The information gained would be a great reference for exploring the genetics, genomics, and evolutionary study of matsutake in the future, and ultimately facilitate the conservation of this vulnerable genetic resource. Oxford University Press 2023-04-25 /pmc/articles/PMC10211490/ /pubmed/37186136 http://dx.doi.org/10.1093/dnares/dsad006 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Kazusa DNA Research Institute. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Resource Article: Genomes Explored Kurokochi, Hiroyuki Tajima, Naoyuki Sato, Mitsuhiko P Yoshitake, Kazutoshi Asakawa, Shuichi Isobe, Sachiko Shirasawa, Kenta Telomere-to-telomere genome assembly of matsutake (Tricholoma matsutake) |
title | Telomere-to-telomere genome assembly of matsutake (Tricholoma matsutake) |
title_full | Telomere-to-telomere genome assembly of matsutake (Tricholoma matsutake) |
title_fullStr | Telomere-to-telomere genome assembly of matsutake (Tricholoma matsutake) |
title_full_unstemmed | Telomere-to-telomere genome assembly of matsutake (Tricholoma matsutake) |
title_short | Telomere-to-telomere genome assembly of matsutake (Tricholoma matsutake) |
title_sort | telomere-to-telomere genome assembly of matsutake (tricholoma matsutake) |
topic | Resource Article: Genomes Explored |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10211490/ https://www.ncbi.nlm.nih.gov/pubmed/37186136 http://dx.doi.org/10.1093/dnares/dsad006 |
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