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Telomere-to-telomere genome assembly of matsutake (Tricholoma matsutake)

Here, we report the first telomere-to-telomere genome assembly of matsutake (Tricholoma matsutake), which consists of 13 sequences (spanning 161.0 Mb) and a 76 kb circular mitochondrial genome. All the 13 sequences were supported with telomeric repeats at the ends. GC-rich regions are located at the...

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Autores principales: Kurokochi, Hiroyuki, Tajima, Naoyuki, Sato, Mitsuhiko P, Yoshitake, Kazutoshi, Asakawa, Shuichi, Isobe, Sachiko, Shirasawa, Kenta
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10211490/
https://www.ncbi.nlm.nih.gov/pubmed/37186136
http://dx.doi.org/10.1093/dnares/dsad006
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author Kurokochi, Hiroyuki
Tajima, Naoyuki
Sato, Mitsuhiko P
Yoshitake, Kazutoshi
Asakawa, Shuichi
Isobe, Sachiko
Shirasawa, Kenta
author_facet Kurokochi, Hiroyuki
Tajima, Naoyuki
Sato, Mitsuhiko P
Yoshitake, Kazutoshi
Asakawa, Shuichi
Isobe, Sachiko
Shirasawa, Kenta
author_sort Kurokochi, Hiroyuki
collection PubMed
description Here, we report the first telomere-to-telomere genome assembly of matsutake (Tricholoma matsutake), which consists of 13 sequences (spanning 161.0 Mb) and a 76 kb circular mitochondrial genome. All the 13 sequences were supported with telomeric repeats at the ends. GC-rich regions are located at the middle of the sequences and are enriched with long interspersed nuclear elements (LINEs). Repetitive sequences including long-terminal repeats (LTRs) and LINEs occupy 71.6% of the genome. A total of 21,887 potential protein-coding genes were predicted. The genomic data reported in this study served not only matsutake gene sequences but also genome structures and intergenic sequences. The information gained would be a great reference for exploring the genetics, genomics, and evolutionary study of matsutake in the future, and ultimately facilitate the conservation of this vulnerable genetic resource.
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spelling pubmed-102114902023-05-26 Telomere-to-telomere genome assembly of matsutake (Tricholoma matsutake) Kurokochi, Hiroyuki Tajima, Naoyuki Sato, Mitsuhiko P Yoshitake, Kazutoshi Asakawa, Shuichi Isobe, Sachiko Shirasawa, Kenta DNA Res Resource Article: Genomes Explored Here, we report the first telomere-to-telomere genome assembly of matsutake (Tricholoma matsutake), which consists of 13 sequences (spanning 161.0 Mb) and a 76 kb circular mitochondrial genome. All the 13 sequences were supported with telomeric repeats at the ends. GC-rich regions are located at the middle of the sequences and are enriched with long interspersed nuclear elements (LINEs). Repetitive sequences including long-terminal repeats (LTRs) and LINEs occupy 71.6% of the genome. A total of 21,887 potential protein-coding genes were predicted. The genomic data reported in this study served not only matsutake gene sequences but also genome structures and intergenic sequences. The information gained would be a great reference for exploring the genetics, genomics, and evolutionary study of matsutake in the future, and ultimately facilitate the conservation of this vulnerable genetic resource. Oxford University Press 2023-04-25 /pmc/articles/PMC10211490/ /pubmed/37186136 http://dx.doi.org/10.1093/dnares/dsad006 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Kazusa DNA Research Institute. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Resource Article: Genomes Explored
Kurokochi, Hiroyuki
Tajima, Naoyuki
Sato, Mitsuhiko P
Yoshitake, Kazutoshi
Asakawa, Shuichi
Isobe, Sachiko
Shirasawa, Kenta
Telomere-to-telomere genome assembly of matsutake (Tricholoma matsutake)
title Telomere-to-telomere genome assembly of matsutake (Tricholoma matsutake)
title_full Telomere-to-telomere genome assembly of matsutake (Tricholoma matsutake)
title_fullStr Telomere-to-telomere genome assembly of matsutake (Tricholoma matsutake)
title_full_unstemmed Telomere-to-telomere genome assembly of matsutake (Tricholoma matsutake)
title_short Telomere-to-telomere genome assembly of matsutake (Tricholoma matsutake)
title_sort telomere-to-telomere genome assembly of matsutake (tricholoma matsutake)
topic Resource Article: Genomes Explored
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10211490/
https://www.ncbi.nlm.nih.gov/pubmed/37186136
http://dx.doi.org/10.1093/dnares/dsad006
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