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Self-assembly coupled to liquid-liquid phase separation

Liquid condensate droplets with distinct compositions of proteins and nucleic acids are widespread in biological cells. While it is known that such droplets, or compartments, can regulate irreversible protein aggregation, their effect on reversible self-assembly remains largely unexplored. In this a...

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Detalles Bibliográficos
Autores principales: Hagan, Michael F., Mohajerani, Farzaneh
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10212142/
https://www.ncbi.nlm.nih.gov/pubmed/37186597
http://dx.doi.org/10.1371/journal.pcbi.1010652
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author Hagan, Michael F.
Mohajerani, Farzaneh
author_facet Hagan, Michael F.
Mohajerani, Farzaneh
author_sort Hagan, Michael F.
collection PubMed
description Liquid condensate droplets with distinct compositions of proteins and nucleic acids are widespread in biological cells. While it is known that such droplets, or compartments, can regulate irreversible protein aggregation, their effect on reversible self-assembly remains largely unexplored. In this article, we use kinetic theory and solution thermodynamics to investigate the effect of liquid-liquid phase separation on the reversible self-assembly of structures with well-defined sizes and architectures. We find that, when assembling subunits preferentially partition into liquid compartments, robustness against kinetic traps and maximum achievable assembly rates can be significantly increased. In particular, both the range of solution conditions leading to productive assembly and the corresponding assembly rates can increase by orders of magnitude. We analyze the rate equation predictions using simple scaling estimates to identify effects of liquid-liquid phase separation as a function of relevant control parameters. These results may elucidate self-assembly processes that underlie normal cellular functions or pathogenesis, and suggest strategies for designing efficient bottom-up assembly for nanomaterials applications.
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spelling pubmed-102121422023-05-26 Self-assembly coupled to liquid-liquid phase separation Hagan, Michael F. Mohajerani, Farzaneh PLoS Comput Biol Research Article Liquid condensate droplets with distinct compositions of proteins and nucleic acids are widespread in biological cells. While it is known that such droplets, or compartments, can regulate irreversible protein aggregation, their effect on reversible self-assembly remains largely unexplored. In this article, we use kinetic theory and solution thermodynamics to investigate the effect of liquid-liquid phase separation on the reversible self-assembly of structures with well-defined sizes and architectures. We find that, when assembling subunits preferentially partition into liquid compartments, robustness against kinetic traps and maximum achievable assembly rates can be significantly increased. In particular, both the range of solution conditions leading to productive assembly and the corresponding assembly rates can increase by orders of magnitude. We analyze the rate equation predictions using simple scaling estimates to identify effects of liquid-liquid phase separation as a function of relevant control parameters. These results may elucidate self-assembly processes that underlie normal cellular functions or pathogenesis, and suggest strategies for designing efficient bottom-up assembly for nanomaterials applications. Public Library of Science 2023-05-15 /pmc/articles/PMC10212142/ /pubmed/37186597 http://dx.doi.org/10.1371/journal.pcbi.1010652 Text en © 2023 Hagan, Mohajerani https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Hagan, Michael F.
Mohajerani, Farzaneh
Self-assembly coupled to liquid-liquid phase separation
title Self-assembly coupled to liquid-liquid phase separation
title_full Self-assembly coupled to liquid-liquid phase separation
title_fullStr Self-assembly coupled to liquid-liquid phase separation
title_full_unstemmed Self-assembly coupled to liquid-liquid phase separation
title_short Self-assembly coupled to liquid-liquid phase separation
title_sort self-assembly coupled to liquid-liquid phase separation
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10212142/
https://www.ncbi.nlm.nih.gov/pubmed/37186597
http://dx.doi.org/10.1371/journal.pcbi.1010652
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