Cargando…

Cryogenic electron ptychographic single particle analysis with wide bandwidth information transfer

Advances in cryogenic transmission electron microscopy have revolutionised the determination of many macromolecular structures at atomic or near-atomic resolution. This method is based on conventional defocused phase contrast imaging. However, it has limitations of weaker contrast for small biologic...

Descripción completa

Detalles Bibliográficos
Autores principales: Pei, Xudong, Zhou, Liqi, Huang, Chen, Boyce, Mark, Kim, Judy S., Liberti, Emanuela, Hu, Yiming, Sasaki, Takeo, Nellist, Peter D., Zhang, Peijun, Stuart, David I., Kirkland, Angus I., Wang, Peng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10212999/
https://www.ncbi.nlm.nih.gov/pubmed/37230988
http://dx.doi.org/10.1038/s41467-023-38268-0
_version_ 1785047534559821824
author Pei, Xudong
Zhou, Liqi
Huang, Chen
Boyce, Mark
Kim, Judy S.
Liberti, Emanuela
Hu, Yiming
Sasaki, Takeo
Nellist, Peter D.
Zhang, Peijun
Stuart, David I.
Kirkland, Angus I.
Wang, Peng
author_facet Pei, Xudong
Zhou, Liqi
Huang, Chen
Boyce, Mark
Kim, Judy S.
Liberti, Emanuela
Hu, Yiming
Sasaki, Takeo
Nellist, Peter D.
Zhang, Peijun
Stuart, David I.
Kirkland, Angus I.
Wang, Peng
author_sort Pei, Xudong
collection PubMed
description Advances in cryogenic transmission electron microscopy have revolutionised the determination of many macromolecular structures at atomic or near-atomic resolution. This method is based on conventional defocused phase contrast imaging. However, it has limitations of weaker contrast for small biological molecules embedded in vitreous ice, in comparison with cryo-ptychography, which shows increased contrast. Here we report a single-particle analysis based on the use of ptychographic reconstruction data, demonstrating that three dimensional reconstructions with a wide information transfer bandwidth can be recovered by Fourier domain synthesis. Our work suggests future applications in otherwise challenging single particle analyses, including small macromolecules and heterogeneous or flexible particles. In addition structure determination in situ within cells without the requirement for protein purification and expression may be possible.
format Online
Article
Text
id pubmed-10212999
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-102129992023-05-27 Cryogenic electron ptychographic single particle analysis with wide bandwidth information transfer Pei, Xudong Zhou, Liqi Huang, Chen Boyce, Mark Kim, Judy S. Liberti, Emanuela Hu, Yiming Sasaki, Takeo Nellist, Peter D. Zhang, Peijun Stuart, David I. Kirkland, Angus I. Wang, Peng Nat Commun Article Advances in cryogenic transmission electron microscopy have revolutionised the determination of many macromolecular structures at atomic or near-atomic resolution. This method is based on conventional defocused phase contrast imaging. However, it has limitations of weaker contrast for small biological molecules embedded in vitreous ice, in comparison with cryo-ptychography, which shows increased contrast. Here we report a single-particle analysis based on the use of ptychographic reconstruction data, demonstrating that three dimensional reconstructions with a wide information transfer bandwidth can be recovered by Fourier domain synthesis. Our work suggests future applications in otherwise challenging single particle analyses, including small macromolecules and heterogeneous or flexible particles. In addition structure determination in situ within cells without the requirement for protein purification and expression may be possible. Nature Publishing Group UK 2023-05-25 /pmc/articles/PMC10212999/ /pubmed/37230988 http://dx.doi.org/10.1038/s41467-023-38268-0 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Pei, Xudong
Zhou, Liqi
Huang, Chen
Boyce, Mark
Kim, Judy S.
Liberti, Emanuela
Hu, Yiming
Sasaki, Takeo
Nellist, Peter D.
Zhang, Peijun
Stuart, David I.
Kirkland, Angus I.
Wang, Peng
Cryogenic electron ptychographic single particle analysis with wide bandwidth information transfer
title Cryogenic electron ptychographic single particle analysis with wide bandwidth information transfer
title_full Cryogenic electron ptychographic single particle analysis with wide bandwidth information transfer
title_fullStr Cryogenic electron ptychographic single particle analysis with wide bandwidth information transfer
title_full_unstemmed Cryogenic electron ptychographic single particle analysis with wide bandwidth information transfer
title_short Cryogenic electron ptychographic single particle analysis with wide bandwidth information transfer
title_sort cryogenic electron ptychographic single particle analysis with wide bandwidth information transfer
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10212999/
https://www.ncbi.nlm.nih.gov/pubmed/37230988
http://dx.doi.org/10.1038/s41467-023-38268-0
work_keys_str_mv AT peixudong cryogenicelectronptychographicsingleparticleanalysiswithwidebandwidthinformationtransfer
AT zhouliqi cryogenicelectronptychographicsingleparticleanalysiswithwidebandwidthinformationtransfer
AT huangchen cryogenicelectronptychographicsingleparticleanalysiswithwidebandwidthinformationtransfer
AT boycemark cryogenicelectronptychographicsingleparticleanalysiswithwidebandwidthinformationtransfer
AT kimjudys cryogenicelectronptychographicsingleparticleanalysiswithwidebandwidthinformationtransfer
AT libertiemanuela cryogenicelectronptychographicsingleparticleanalysiswithwidebandwidthinformationtransfer
AT huyiming cryogenicelectronptychographicsingleparticleanalysiswithwidebandwidthinformationtransfer
AT sasakitakeo cryogenicelectronptychographicsingleparticleanalysiswithwidebandwidthinformationtransfer
AT nellistpeterd cryogenicelectronptychographicsingleparticleanalysiswithwidebandwidthinformationtransfer
AT zhangpeijun cryogenicelectronptychographicsingleparticleanalysiswithwidebandwidthinformationtransfer
AT stuartdavidi cryogenicelectronptychographicsingleparticleanalysiswithwidebandwidthinformationtransfer
AT kirklandangusi cryogenicelectronptychographicsingleparticleanalysiswithwidebandwidthinformationtransfer
AT wangpeng cryogenicelectronptychographicsingleparticleanalysiswithwidebandwidthinformationtransfer