Cargando…

Simultaneous selection of multiple important single nucleotide polymorphisms in familial genome wide association studies data

We propose a resampling-based fast variable selection technique for detecting relevant single nucleotide polymorphisms (SNP) in a multi-marker mixed effect model. Due to computational complexity, current practice primarily involves testing the effect of one SNP at a time, commonly termed as ‘single...

Descripción completa

Detalles Bibliográficos
Autores principales:	Majumdar, Subhabrata, Basu, Saonli, McGue, Matt, Chatterjee, Snigdhansu
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group UK 2023
Materias:	Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10213008/ https://www.ncbi.nlm.nih.gov/pubmed/37231056 http://dx.doi.org/10.1038/s41598-023-35379-y

Ejemplares similares

Resampling-based tests for Lasso in genome-wide association studies
por: Arbet, Jaron, et al.
Publicado: (2017)

Results of a “GWAS Plus:” General Cognitive Ability Is Substantially Heritable and Massively Polygenic
por: Kirkpatrick, Robert M., et al.
Publicado: (2014)

A Behavioral-Genetic Perspective on Children of Alcoholics
por: McGue, Matt
Publicado: (1997)

Simultaneous analysis of all single-nucleotide polymorphisms in genome-wide association study of rheumatoid arthritis
por: Mathew, George, et al.
Publicado: (2009)

Epigenome-Wide Association Study of Cognitive Functioning in Middle-Aged Monozygotic Twins
por: Starnawska, Anna, et al.
Publicado: (2017)

Simultaneous multiple single nucleotide polymorphism detection based on click chemistry combined with DNA-encoded probes
por: Zhou, Qian-Yu, et al.
Publicado: (2018)

A computational method for genotype calling in family-based sequencing data
por: Chang, Lun-Ching, et al.
Publicado: (2016)

U-statistics, Mm-estimators and resampling
por: Bose, Arup, et al.
Publicado: (2018)

Winsorization for Robust Bayesian Neural Networks
por: Sharma, Somya, et al.
Publicado: (2021)

Comparison of genome-wide single-nucleotide polymorphism linkage analyses in Caucasian and Hispanic NARAC families
por: Chen, Wei V, et al.
Publicado: (2007)

Single nucleotide polymorphism-based genome-wide linkage analysis in Japanese atopic dermatitis families
por: Enomoto, Hisako, et al.
Publicado: (2007)

A Bayesian Gene-Based Genome-Wide Association Study Analysis of Osteosarcoma Trio Data Using a Hierarchically Structured Prior
por: Yang, Yi, et al.
Publicado: (2018)

Genome-Wide Patterns of Nucleotide Polymorphism in Domesticated Rice
por: Caicedo, Ana L, et al.
Publicado: (2007)

Polymorphisms in the Base Excision Repair Pathway and Graft-versus-Host Disease
por: Arora, Mukta, et al.
Publicado: (2010)

Association of Single-Nucleotide Polymorphisms in Interleukin Genes with Microbial Keratitis in a South Indian Population
por: Konda, Nagaraju, et al.
Publicado: (2022)

Powerful association test combining rare variant and gene expression using family data from Genetic Analysis Workshop 19
por: Ho, Yen-Yi, et al.
Publicado: (2016)

Evolutionary algorithms for the selection of single nucleotide polymorphisms
por: Hubley, Robert M, et al.
Publicado: (2003)

Software for tag single nucleotide polymorphism selection
por: Stram, Daniel O
Publicado: (2005)

A powerful hybrid approach to select top single-nucleotide polymorphisms for genome-wide association study
por: Wang, Jian, et al.
Publicado: (2011)

The Effect of Single Nucleotide Polymorphisms from Genome Wide Association Studies in Multiple Sclerosis on Gene Expression
por: Handel, Adam E., et al.
Publicado: (2010)

The Effect of Paternal Age on Offspring Intelligence and Personality when Controlling for Parental Trait Levels
por: Arslan, Ruben C., et al.
Publicado: (2014)

SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip
por: Fujisawa, Hironori, et al.
Publicado: (2009)

Genome-wide single nucleotide polymorphism analyses on rheumatoid arthritis
por: Yamamoto, K, et al.
Publicado: (2004)

Using temporal detrending to observe the spatial correlation of traffic
por: Ermagun, Alireza, et al.
Publicado: (2017)

Genome-wide single-nucleotide polymorphism linkage analyses of quantitative rheumatoid arthritis phenotypes in Caucasian NARAC families
por: Taylor, Kimberly E, et al.
Publicado: (2007)

Mechanisms underlying familial aggregation of exceptional health and survival: A three‐generation cohort study
por: Christensen, Kaare, et al.
Publicado: (2020)

SES-of-Origin and BMI in Youth: Comparing Germany and Minnesota
por: Johnson, Wendy, et al.
Publicado: (2018)

Signatures of positive selection in East African Shorthorn Zebu: A genome-wide single nucleotide polymorphism analysis
por: Bahbahani, Hussain, et al.
Publicado: (2015)

Genome-Wide Single-Nucleotide Polymorphism-Based Genomic Diversity and Runs of Homozygosity for Selection Signatures in Equine Breeds
por: Bhardwaj, Anuradha, et al.
Publicado: (2023)

Epigenome-wide association study of depression symptomatology in elderly monozygotic twins
por: Starnawska, A., et al.
Publicado: (2019)

Selection of single-nucleotide polymorphisms in disease association data
por: Joo, Jungnam, et al.
Publicado: (2005)

Efficient estimation of SNP heritability using Gaussian predictive process in large scale cohort studies
por: Seal, Souvik, et al.
Publicado: (2022)

Comparing heritability estimators under alternative structures of linkage disequilibrium
por: Min, Alan, et al.
Publicado: (2022)

CLU Genetic Variants and Cognitive Decline among Elderly and Oldest Old
por: Mengel-From, Jonas, et al.
Publicado: (2013)

Lifespans of Twins: Does Zygosity Matter?
por: Hjelmborg, Jacob, et al.
Publicado: (2019)

Multiple Infectious Complications in a Severely Injured Patient with Single Nucleotide Polymorphisms in Important Innate Immune Response Genes
por: Bronkhorst, Maarten W.G.A., et al.
Publicado: (2015)

DNA methylation age is associated with mortality in a longitudinal Danish twin study
por: Christiansen, Lene, et al.
Publicado: (2015)

Using multivariate endophenotypes to identify psychophysiological mechanisms associated with polygenic scores for substance use, schizophrenia, and education attainment
por: Harper, Jeremy, et al.
Publicado: (2022)

Single Nucleotide Polymorphisms in Selected Genes in Inflammatory Bowel Disease
por: Dudzińska, Ewa, et al.
Publicado: (2018)

Application of Genome-Wide Single Nucleotide Polymorphism Typing: Simple Association and Beyond
por: Gibbs, J. Raphael, et al.
Publicado: (2006)

Cannot write session to /tmp/vufind_sessions/sess_c1f8sp9omtg6ec8qfd33pevkgr