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Establishing a genomic radiation-age association for space exploration supplements lung disease differentiation
PURPOSE: One possible way to quantify each individual's response or damage from ionizing radiation is to estimate their accelerated biological age following exposure. Since there is currently no definitive way to know if biological age estimations are accurate, we aim to establish a rad-age ass...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10213902/ https://www.ncbi.nlm.nih.gov/pubmed/37250098 http://dx.doi.org/10.3389/fpubh.2023.1161124 |
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author | Ruprecht, Nathan A. Singhal, Sonalika Schaefer, Kalli Gill, Jappreet S. Bansal, Benu Sens, Donald Singhal, Sandeep K. |
author_facet | Ruprecht, Nathan A. Singhal, Sonalika Schaefer, Kalli Gill, Jappreet S. Bansal, Benu Sens, Donald Singhal, Sandeep K. |
author_sort | Ruprecht, Nathan A. |
collection | PubMed |
description | PURPOSE: One possible way to quantify each individual's response or damage from ionizing radiation is to estimate their accelerated biological age following exposure. Since there is currently no definitive way to know if biological age estimations are accurate, we aim to establish a rad-age association using genomics as its foundation. METHODS: Two datasets were combined and used to empirically find the age cutoff between young and old patients. With age as both a categorical and continuous variable, two other datasets that included radiation exposure are used to test the interaction between radiation and age. The gene lists are oriented in preranked lists for both pathway and diseases analysis. Finally, these genes are used to evaluate another dataset on the clinical relevance in differentiating lung disease given ethnicity and sex using both pairwise t-tests and linear models. RESULTS: Using 12 well-known genes associated with aging, a threshold of 29-years-old was found to be the difference between young and old patients. The two interaction tests yielded 234 unique genes such that pathway analysis flagged IL-1 signaling and PRPP biosynthesis as significant with high cell proliferation diseases and carcinomas being a common trend. LAPTM4B was the only gene with significant interaction among lung disease, ethnicity, and sex, with fold change greater than two. CONCLUSION: The results corroborate an initial association between radiation and age, given inflammation and metabolic pathways and multiple genes emphasizing mitochondrial function, oxidation, and histone modification. Being able to tie rad-age genes to lung disease supplements future work for risk assessment following radiation exposure. |
format | Online Article Text |
id | pubmed-10213902 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-102139022023-05-27 Establishing a genomic radiation-age association for space exploration supplements lung disease differentiation Ruprecht, Nathan A. Singhal, Sonalika Schaefer, Kalli Gill, Jappreet S. Bansal, Benu Sens, Donald Singhal, Sandeep K. Front Public Health Public Health PURPOSE: One possible way to quantify each individual's response or damage from ionizing radiation is to estimate their accelerated biological age following exposure. Since there is currently no definitive way to know if biological age estimations are accurate, we aim to establish a rad-age association using genomics as its foundation. METHODS: Two datasets were combined and used to empirically find the age cutoff between young and old patients. With age as both a categorical and continuous variable, two other datasets that included radiation exposure are used to test the interaction between radiation and age. The gene lists are oriented in preranked lists for both pathway and diseases analysis. Finally, these genes are used to evaluate another dataset on the clinical relevance in differentiating lung disease given ethnicity and sex using both pairwise t-tests and linear models. RESULTS: Using 12 well-known genes associated with aging, a threshold of 29-years-old was found to be the difference between young and old patients. The two interaction tests yielded 234 unique genes such that pathway analysis flagged IL-1 signaling and PRPP biosynthesis as significant with high cell proliferation diseases and carcinomas being a common trend. LAPTM4B was the only gene with significant interaction among lung disease, ethnicity, and sex, with fold change greater than two. CONCLUSION: The results corroborate an initial association between radiation and age, given inflammation and metabolic pathways and multiple genes emphasizing mitochondrial function, oxidation, and histone modification. Being able to tie rad-age genes to lung disease supplements future work for risk assessment following radiation exposure. Frontiers Media S.A. 2023-05-11 /pmc/articles/PMC10213902/ /pubmed/37250098 http://dx.doi.org/10.3389/fpubh.2023.1161124 Text en Copyright © 2023 Ruprecht, Singhal, Schaefer, Gill, Bansal, Sens and Singhal. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Public Health Ruprecht, Nathan A. Singhal, Sonalika Schaefer, Kalli Gill, Jappreet S. Bansal, Benu Sens, Donald Singhal, Sandeep K. Establishing a genomic radiation-age association for space exploration supplements lung disease differentiation |
title | Establishing a genomic radiation-age association for space exploration supplements lung disease differentiation |
title_full | Establishing a genomic radiation-age association for space exploration supplements lung disease differentiation |
title_fullStr | Establishing a genomic radiation-age association for space exploration supplements lung disease differentiation |
title_full_unstemmed | Establishing a genomic radiation-age association for space exploration supplements lung disease differentiation |
title_short | Establishing a genomic radiation-age association for space exploration supplements lung disease differentiation |
title_sort | establishing a genomic radiation-age association for space exploration supplements lung disease differentiation |
topic | Public Health |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10213902/ https://www.ncbi.nlm.nih.gov/pubmed/37250098 http://dx.doi.org/10.3389/fpubh.2023.1161124 |
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