Cargando…
First record of the complete chloroplast genome of Polygonatum infundiflorum (Asparagaceae), a Korean endemic species
Polygonatum infundiflorum Y.S. Kim, B.U. Oh & C.G. Jang et al. 1998 is a Korean endemic species. This is first report on the complete chloroplast genome sequence of P. infundiflorum. The complete chloroplast genome length was 154,578 bp with a GC content of 37.7%. The large single-copy (LSC) reg...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10215011/ https://www.ncbi.nlm.nih.gov/pubmed/37250207 http://dx.doi.org/10.1080/23802359.2023.2215349 |
_version_ | 1785047962073694208 |
---|---|
author | Lee, Se Ryeong Ha, Young-Ho Son, Dong Chan Kim, Sang-Chul |
author_facet | Lee, Se Ryeong Ha, Young-Ho Son, Dong Chan Kim, Sang-Chul |
author_sort | Lee, Se Ryeong |
collection | PubMed |
description | Polygonatum infundiflorum Y.S. Kim, B.U. Oh & C.G. Jang et al. 1998 is a Korean endemic species. This is first report on the complete chloroplast genome sequence of P. infundiflorum. The complete chloroplast genome length was 154,578 bp with a GC content of 37.7%. The large single-copy (LSC) region was 83,527 bp long, and the small single-copy (SSC) region was 18,457 bp long. The paired inverted repeats (IRs) were 26,297 bp and separated the LCS and SSC regions. There were 113 genes, comprising 78 protein-coding genes, four rRNA genes, 30 tRNA genes, and one pseudogene (infA). In total, 16 genes contained one intron, and two genes contained two introns. Phylogenetic analysis suggested that Polygonatum was divided into three sections, each forming a monophyletic group. P. infundiflorum was sister to P. macropodum and formed a monophyletic group with P. inflatum. This study provides basic information for future research and contributes to taxonomic and genetic studies on Polygonatum. |
format | Online Article Text |
id | pubmed-10215011 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-102150112023-05-27 First record of the complete chloroplast genome of Polygonatum infundiflorum (Asparagaceae), a Korean endemic species Lee, Se Ryeong Ha, Young-Ho Son, Dong Chan Kim, Sang-Chul Mitochondrial DNA B Resour Plastome Reports Polygonatum infundiflorum Y.S. Kim, B.U. Oh & C.G. Jang et al. 1998 is a Korean endemic species. This is first report on the complete chloroplast genome sequence of P. infundiflorum. The complete chloroplast genome length was 154,578 bp with a GC content of 37.7%. The large single-copy (LSC) region was 83,527 bp long, and the small single-copy (SSC) region was 18,457 bp long. The paired inverted repeats (IRs) were 26,297 bp and separated the LCS and SSC regions. There were 113 genes, comprising 78 protein-coding genes, four rRNA genes, 30 tRNA genes, and one pseudogene (infA). In total, 16 genes contained one intron, and two genes contained two introns. Phylogenetic analysis suggested that Polygonatum was divided into three sections, each forming a monophyletic group. P. infundiflorum was sister to P. macropodum and formed a monophyletic group with P. inflatum. This study provides basic information for future research and contributes to taxonomic and genetic studies on Polygonatum. Taylor & Francis 2023-05-25 /pmc/articles/PMC10215011/ /pubmed/37250207 http://dx.doi.org/10.1080/23802359.2023.2215349 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) ), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The terms on which this article has been published allow the posting of the Accepted Manuscript in a repository by the author(s) or with their consent. |
spellingShingle | Plastome Reports Lee, Se Ryeong Ha, Young-Ho Son, Dong Chan Kim, Sang-Chul First record of the complete chloroplast genome of Polygonatum infundiflorum (Asparagaceae), a Korean endemic species |
title | First record of the complete chloroplast genome of Polygonatum infundiflorum (Asparagaceae), a Korean endemic species |
title_full | First record of the complete chloroplast genome of Polygonatum infundiflorum (Asparagaceae), a Korean endemic species |
title_fullStr | First record of the complete chloroplast genome of Polygonatum infundiflorum (Asparagaceae), a Korean endemic species |
title_full_unstemmed | First record of the complete chloroplast genome of Polygonatum infundiflorum (Asparagaceae), a Korean endemic species |
title_short | First record of the complete chloroplast genome of Polygonatum infundiflorum (Asparagaceae), a Korean endemic species |
title_sort | first record of the complete chloroplast genome of polygonatum infundiflorum (asparagaceae), a korean endemic species |
topic | Plastome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10215011/ https://www.ncbi.nlm.nih.gov/pubmed/37250207 http://dx.doi.org/10.1080/23802359.2023.2215349 |
work_keys_str_mv | AT leeseryeong firstrecordofthecompletechloroplastgenomeofpolygonatuminfundiflorumasparagaceaeakoreanendemicspecies AT hayoungho firstrecordofthecompletechloroplastgenomeofpolygonatuminfundiflorumasparagaceaeakoreanendemicspecies AT sondongchan firstrecordofthecompletechloroplastgenomeofpolygonatuminfundiflorumasparagaceaeakoreanendemicspecies AT kimsangchul firstrecordofthecompletechloroplastgenomeofpolygonatuminfundiflorumasparagaceaeakoreanendemicspecies |