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The complete chloroplast genome of Calophyllum soulattri Burm. f. (Calophyllaceae)
Calophyllum soulattri Burm. f. (1768) is an evergreen tree native to Southeast Asia, Australia, and the Solomon Islands. It is known for its medicinal uses and has been utilized in traditional folk medicine. However, genomic resources for this species are still unavailable. In this study, we sequenc...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10215020/ https://www.ncbi.nlm.nih.gov/pubmed/37250208 http://dx.doi.org/10.1080/23802359.2023.2215350 |
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author | Pahayo, Dexter G. Cadorna, Charles Anthon E. Quimado, Marilyn O. Rey, Jessica D. |
author_facet | Pahayo, Dexter G. Cadorna, Charles Anthon E. Quimado, Marilyn O. Rey, Jessica D. |
author_sort | Pahayo, Dexter G. |
collection | PubMed |
description | Calophyllum soulattri Burm. f. (1768) is an evergreen tree native to Southeast Asia, Australia, and the Solomon Islands. It is known for its medicinal uses and has been utilized in traditional folk medicine. However, genomic resources for this species are still unavailable. In this study, we sequenced and assembled the first complete chloroplast genome of C. soulattri using next-generation sequencing data. The chloroplast genome of C. soulattri is 161,381 bp in length with a total GC content of 36.36%. The chloroplast genome contains a large single copy (LSC) region of 88,680 bp, a small single copy (SSC) region of 17,453 bp, and two inverted repeat (IR) regions of 27,624 bp each. Furthermore, the chloroplast genome has 131 genes, which include 86 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis indicated that C. soulattri is clustered in the same branch with C. inophyllum and is closely related to Mesua ferrea. |
format | Online Article Text |
id | pubmed-10215020 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-102150202023-05-27 The complete chloroplast genome of Calophyllum soulattri Burm. f. (Calophyllaceae) Pahayo, Dexter G. Cadorna, Charles Anthon E. Quimado, Marilyn O. Rey, Jessica D. Mitochondrial DNA B Resour Plastome Announcement Calophyllum soulattri Burm. f. (1768) is an evergreen tree native to Southeast Asia, Australia, and the Solomon Islands. It is known for its medicinal uses and has been utilized in traditional folk medicine. However, genomic resources for this species are still unavailable. In this study, we sequenced and assembled the first complete chloroplast genome of C. soulattri using next-generation sequencing data. The chloroplast genome of C. soulattri is 161,381 bp in length with a total GC content of 36.36%. The chloroplast genome contains a large single copy (LSC) region of 88,680 bp, a small single copy (SSC) region of 17,453 bp, and two inverted repeat (IR) regions of 27,624 bp each. Furthermore, the chloroplast genome has 131 genes, which include 86 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis indicated that C. soulattri is clustered in the same branch with C. inophyllum and is closely related to Mesua ferrea. Taylor & Francis 2023-05-25 /pmc/articles/PMC10215020/ /pubmed/37250208 http://dx.doi.org/10.1080/23802359.2023.2215350 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group. https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. The terms on which this article has been published allow the posting of the Accepted Manuscript in a repository by the author(s) or with their consent. |
spellingShingle | Plastome Announcement Pahayo, Dexter G. Cadorna, Charles Anthon E. Quimado, Marilyn O. Rey, Jessica D. The complete chloroplast genome of Calophyllum soulattri Burm. f. (Calophyllaceae) |
title | The complete chloroplast genome of Calophyllum soulattri Burm. f. (Calophyllaceae) |
title_full | The complete chloroplast genome of Calophyllum soulattri Burm. f. (Calophyllaceae) |
title_fullStr | The complete chloroplast genome of Calophyllum soulattri Burm. f. (Calophyllaceae) |
title_full_unstemmed | The complete chloroplast genome of Calophyllum soulattri Burm. f. (Calophyllaceae) |
title_short | The complete chloroplast genome of Calophyllum soulattri Burm. f. (Calophyllaceae) |
title_sort | complete chloroplast genome of calophyllum soulattri burm. f. (calophyllaceae) |
topic | Plastome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10215020/ https://www.ncbi.nlm.nih.gov/pubmed/37250208 http://dx.doi.org/10.1080/23802359.2023.2215350 |
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