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Decoding the physiological response of plants to stress using deep learning for forecasting crop loss due to abiotic, biotic, and climatic variables

This paper presents a simple method for detecting both biotic and abiotic stress in plants. Stress levels are measured based on the increase in nutrient uptake by plants as a mechanism of self-defense when under stress. A continuous electrical resistance measurement was used to estimate the rate of...

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Autores principales: Kumar, Mridul, Saifi, Zeeshan, Krishnananda, Soami Daya
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10215062/
https://www.ncbi.nlm.nih.gov/pubmed/37237041
http://dx.doi.org/10.1038/s41598-023-35285-3
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author Kumar, Mridul
Saifi, Zeeshan
Krishnananda, Soami Daya
author_facet Kumar, Mridul
Saifi, Zeeshan
Krishnananda, Soami Daya
author_sort Kumar, Mridul
collection PubMed
description This paper presents a simple method for detecting both biotic and abiotic stress in plants. Stress levels are measured based on the increase in nutrient uptake by plants as a mechanism of self-defense when under stress. A continuous electrical resistance measurement was used to estimate the rate of change of nutrients in agarose as the growth medium for Cicer arietinum (Chickpea) seeds. To determine the concentration of charge carriers in the growth medium, Drude’s model was used. For identifying anomalies and forecasting plant stress, two experiments were conducted and outliers were found in electrical resistance and relative changes in carrier concentration. Anomaly in the first iteration was detected by applying k-Nearest Neighbour, One Class Support Vector Machine and Local Outlier Factor in unsupervised mode on electrical resistance data. In the second iteration, the neural network-based Long Short Term Memory method was used on the relative change in the carrier concentration data. As a result of the change in resistance of growth media during stress, nutrient concentrations shifted by 35%, as previously reported. Farmers who cater to small communities around them and are most affected by local and global stress factors can use this method of forecasting.
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spelling pubmed-102150622023-05-28 Decoding the physiological response of plants to stress using deep learning for forecasting crop loss due to abiotic, biotic, and climatic variables Kumar, Mridul Saifi, Zeeshan Krishnananda, Soami Daya Sci Rep Article This paper presents a simple method for detecting both biotic and abiotic stress in plants. Stress levels are measured based on the increase in nutrient uptake by plants as a mechanism of self-defense when under stress. A continuous electrical resistance measurement was used to estimate the rate of change of nutrients in agarose as the growth medium for Cicer arietinum (Chickpea) seeds. To determine the concentration of charge carriers in the growth medium, Drude’s model was used. For identifying anomalies and forecasting plant stress, two experiments were conducted and outliers were found in electrical resistance and relative changes in carrier concentration. Anomaly in the first iteration was detected by applying k-Nearest Neighbour, One Class Support Vector Machine and Local Outlier Factor in unsupervised mode on electrical resistance data. In the second iteration, the neural network-based Long Short Term Memory method was used on the relative change in the carrier concentration data. As a result of the change in resistance of growth media during stress, nutrient concentrations shifted by 35%, as previously reported. Farmers who cater to small communities around them and are most affected by local and global stress factors can use this method of forecasting. Nature Publishing Group UK 2023-05-26 /pmc/articles/PMC10215062/ /pubmed/37237041 http://dx.doi.org/10.1038/s41598-023-35285-3 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Kumar, Mridul
Saifi, Zeeshan
Krishnananda, Soami Daya
Decoding the physiological response of plants to stress using deep learning for forecasting crop loss due to abiotic, biotic, and climatic variables
title Decoding the physiological response of plants to stress using deep learning for forecasting crop loss due to abiotic, biotic, and climatic variables
title_full Decoding the physiological response of plants to stress using deep learning for forecasting crop loss due to abiotic, biotic, and climatic variables
title_fullStr Decoding the physiological response of plants to stress using deep learning for forecasting crop loss due to abiotic, biotic, and climatic variables
title_full_unstemmed Decoding the physiological response of plants to stress using deep learning for forecasting crop loss due to abiotic, biotic, and climatic variables
title_short Decoding the physiological response of plants to stress using deep learning for forecasting crop loss due to abiotic, biotic, and climatic variables
title_sort decoding the physiological response of plants to stress using deep learning for forecasting crop loss due to abiotic, biotic, and climatic variables
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10215062/
https://www.ncbi.nlm.nih.gov/pubmed/37237041
http://dx.doi.org/10.1038/s41598-023-35285-3
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