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Label-Free Sequence-Specific Visualization of LAMP Amplified Salmonella via DNA Machine Produces G-Quadruplex DNAzyme

Salmonella is one of four key global causes of diarrhea, and in humans, it is generally contracted through the consumption of contaminated food. It is necessary to develop an accurate, simple, and rapid method to monitor Salmonella in the early phase. Herein, we developed a sequence-specific visuali...

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Autores principales: Zeng, Huan, Huang, Shuqin, Chen, Yunong, Chen, Minshi, He, Kaiyu, Fu, Caili, Wang, Qiang, Zhang, Fang, Wang, Liu, Xu, Xiahong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10216017/
https://www.ncbi.nlm.nih.gov/pubmed/37232864
http://dx.doi.org/10.3390/bios13050503
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author Zeng, Huan
Huang, Shuqin
Chen, Yunong
Chen, Minshi
He, Kaiyu
Fu, Caili
Wang, Qiang
Zhang, Fang
Wang, Liu
Xu, Xiahong
author_facet Zeng, Huan
Huang, Shuqin
Chen, Yunong
Chen, Minshi
He, Kaiyu
Fu, Caili
Wang, Qiang
Zhang, Fang
Wang, Liu
Xu, Xiahong
author_sort Zeng, Huan
collection PubMed
description Salmonella is one of four key global causes of diarrhea, and in humans, it is generally contracted through the consumption of contaminated food. It is necessary to develop an accurate, simple, and rapid method to monitor Salmonella in the early phase. Herein, we developed a sequence-specific visualization method based on loop-mediated isothermal amplification (LAMP) for the detection of Salmonella in milk. With restriction endonuclease and nicking endonuclease, amplicons were produced into single-stranded triggers, which further promoted the generation of a G-quadruplex by a DNA machine. The G-quadruplex DNAzyme possesses peroxidase-like activity and catalyzes the color development of 2,2′-azino-di-(3-ethylbenzthiazoline sulfonic acid) (ABTS) as the readouts. The feasibility for real samples analysis was also confirmed with Salmonella spiked milk, and the sensitivity was 800 CFU/mL when observed with the naked eye. Using this method, the detection of Salmonella in milk can be completed within 1.5 h. Without the involvement of any sophisticated instrument, this specific colorimetric method can be a useful tool in resource-limited areas.
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spelling pubmed-102160172023-05-27 Label-Free Sequence-Specific Visualization of LAMP Amplified Salmonella via DNA Machine Produces G-Quadruplex DNAzyme Zeng, Huan Huang, Shuqin Chen, Yunong Chen, Minshi He, Kaiyu Fu, Caili Wang, Qiang Zhang, Fang Wang, Liu Xu, Xiahong Biosensors (Basel) Article Salmonella is one of four key global causes of diarrhea, and in humans, it is generally contracted through the consumption of contaminated food. It is necessary to develop an accurate, simple, and rapid method to monitor Salmonella in the early phase. Herein, we developed a sequence-specific visualization method based on loop-mediated isothermal amplification (LAMP) for the detection of Salmonella in milk. With restriction endonuclease and nicking endonuclease, amplicons were produced into single-stranded triggers, which further promoted the generation of a G-quadruplex by a DNA machine. The G-quadruplex DNAzyme possesses peroxidase-like activity and catalyzes the color development of 2,2′-azino-di-(3-ethylbenzthiazoline sulfonic acid) (ABTS) as the readouts. The feasibility for real samples analysis was also confirmed with Salmonella spiked milk, and the sensitivity was 800 CFU/mL when observed with the naked eye. Using this method, the detection of Salmonella in milk can be completed within 1.5 h. Without the involvement of any sophisticated instrument, this specific colorimetric method can be a useful tool in resource-limited areas. MDPI 2023-04-26 /pmc/articles/PMC10216017/ /pubmed/37232864 http://dx.doi.org/10.3390/bios13050503 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Zeng, Huan
Huang, Shuqin
Chen, Yunong
Chen, Minshi
He, Kaiyu
Fu, Caili
Wang, Qiang
Zhang, Fang
Wang, Liu
Xu, Xiahong
Label-Free Sequence-Specific Visualization of LAMP Amplified Salmonella via DNA Machine Produces G-Quadruplex DNAzyme
title Label-Free Sequence-Specific Visualization of LAMP Amplified Salmonella via DNA Machine Produces G-Quadruplex DNAzyme
title_full Label-Free Sequence-Specific Visualization of LAMP Amplified Salmonella via DNA Machine Produces G-Quadruplex DNAzyme
title_fullStr Label-Free Sequence-Specific Visualization of LAMP Amplified Salmonella via DNA Machine Produces G-Quadruplex DNAzyme
title_full_unstemmed Label-Free Sequence-Specific Visualization of LAMP Amplified Salmonella via DNA Machine Produces G-Quadruplex DNAzyme
title_short Label-Free Sequence-Specific Visualization of LAMP Amplified Salmonella via DNA Machine Produces G-Quadruplex DNAzyme
title_sort label-free sequence-specific visualization of lamp amplified salmonella via dna machine produces g-quadruplex dnazyme
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10216017/
https://www.ncbi.nlm.nih.gov/pubmed/37232864
http://dx.doi.org/10.3390/bios13050503
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