Cargando…

Ensuring Explainability and Dimensionality Reduction in a Multidimensional HSI World for Early XAI-Diagnostics of Plant Stress

This work is mostly devoted to the search for effective solutions to the problem of early diagnosis of plant stress (given an example of wheat and its drought stress), which would be based on explainable artificial intelligence (XAI). The main idea is to combine the benefits of two of the most popul...

Descripción completa

Detalles Bibliográficos
Autores principales: Lysov, Maxim, Pukhkiy, Konstantin, Vasiliev, Evgeny, Getmanskaya, Alexandra, Turlapov, Vadim
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10217094/
https://www.ncbi.nlm.nih.gov/pubmed/37238556
http://dx.doi.org/10.3390/e25050801
_version_ 1785048453999493120
author Lysov, Maxim
Pukhkiy, Konstantin
Vasiliev, Evgeny
Getmanskaya, Alexandra
Turlapov, Vadim
author_facet Lysov, Maxim
Pukhkiy, Konstantin
Vasiliev, Evgeny
Getmanskaya, Alexandra
Turlapov, Vadim
author_sort Lysov, Maxim
collection PubMed
description This work is mostly devoted to the search for effective solutions to the problem of early diagnosis of plant stress (given an example of wheat and its drought stress), which would be based on explainable artificial intelligence (XAI). The main idea is to combine the benefits of two of the most popular agricultural data sources, hyperspectral images (HSI) and thermal infrared images (TIR), in a single XAI model. Our own dataset of a 25-day experiment was used, which was created via both (1) an HSI camera Specim IQ (400–1000 nm, 204, 512 × 512) and (2) a TIR camera Testo 885-2 (320 × 240, res. 0.1 °C). The HSI were a source of the k-dimensional high-level features of plants (k ≤ K, where K is the number of HSI channels) for the learning process. Such combination was implemented as a single-layer perceptron (SLP) regressor, which is the main feature of the XAI model and receives as input an HSI pixel-signature belonging to the plant mask, which then automatically through the mask receives a mark from the TIR. The correlation of HSI channels with the TIR image on the plant’s mask on the days of the experiment was studied. It was established that HSI channel 143 (820 nm) was the most correlated with TIR. The problem of training the HSI signatures of plants with their corresponding temperature value via the XAI model was solved. The RMSE of plant temperature prediction is 0.2–0.3 °C, which is acceptable for early diagnostics. Each HSI pixel was represented in training by a number (k) of channels (k ≤ K = 204 in our case). The number of channels used for training was minimized by a factor of 25–30, from 204 to eight or seven, while maintaining the RMSE value. The model is computationally efficient in training; the average training time was much less than one minute (Intel Core i3-8130U, 2.2 GHz, 4 cores, 4 GB). This XAI model can be considered a research-aimed model (R-XAI), which allows the transfer of knowledge about plants from the TIR domain to the HSI domain, with their contrasting onto only a few from hundreds of HSI channels.
format Online
Article
Text
id pubmed-10217094
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher MDPI
record_format MEDLINE/PubMed
spelling pubmed-102170942023-05-27 Ensuring Explainability and Dimensionality Reduction in a Multidimensional HSI World for Early XAI-Diagnostics of Plant Stress Lysov, Maxim Pukhkiy, Konstantin Vasiliev, Evgeny Getmanskaya, Alexandra Turlapov, Vadim Entropy (Basel) Article This work is mostly devoted to the search for effective solutions to the problem of early diagnosis of plant stress (given an example of wheat and its drought stress), which would be based on explainable artificial intelligence (XAI). The main idea is to combine the benefits of two of the most popular agricultural data sources, hyperspectral images (HSI) and thermal infrared images (TIR), in a single XAI model. Our own dataset of a 25-day experiment was used, which was created via both (1) an HSI camera Specim IQ (400–1000 nm, 204, 512 × 512) and (2) a TIR camera Testo 885-2 (320 × 240, res. 0.1 °C). The HSI were a source of the k-dimensional high-level features of plants (k ≤ K, where K is the number of HSI channels) for the learning process. Such combination was implemented as a single-layer perceptron (SLP) regressor, which is the main feature of the XAI model and receives as input an HSI pixel-signature belonging to the plant mask, which then automatically through the mask receives a mark from the TIR. The correlation of HSI channels with the TIR image on the plant’s mask on the days of the experiment was studied. It was established that HSI channel 143 (820 nm) was the most correlated with TIR. The problem of training the HSI signatures of plants with their corresponding temperature value via the XAI model was solved. The RMSE of plant temperature prediction is 0.2–0.3 °C, which is acceptable for early diagnostics. Each HSI pixel was represented in training by a number (k) of channels (k ≤ K = 204 in our case). The number of channels used for training was minimized by a factor of 25–30, from 204 to eight or seven, while maintaining the RMSE value. The model is computationally efficient in training; the average training time was much less than one minute (Intel Core i3-8130U, 2.2 GHz, 4 cores, 4 GB). This XAI model can be considered a research-aimed model (R-XAI), which allows the transfer of knowledge about plants from the TIR domain to the HSI domain, with their contrasting onto only a few from hundreds of HSI channels. MDPI 2023-05-15 /pmc/articles/PMC10217094/ /pubmed/37238556 http://dx.doi.org/10.3390/e25050801 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Lysov, Maxim
Pukhkiy, Konstantin
Vasiliev, Evgeny
Getmanskaya, Alexandra
Turlapov, Vadim
Ensuring Explainability and Dimensionality Reduction in a Multidimensional HSI World for Early XAI-Diagnostics of Plant Stress
title Ensuring Explainability and Dimensionality Reduction in a Multidimensional HSI World for Early XAI-Diagnostics of Plant Stress
title_full Ensuring Explainability and Dimensionality Reduction in a Multidimensional HSI World for Early XAI-Diagnostics of Plant Stress
title_fullStr Ensuring Explainability and Dimensionality Reduction in a Multidimensional HSI World for Early XAI-Diagnostics of Plant Stress
title_full_unstemmed Ensuring Explainability and Dimensionality Reduction in a Multidimensional HSI World for Early XAI-Diagnostics of Plant Stress
title_short Ensuring Explainability and Dimensionality Reduction in a Multidimensional HSI World for Early XAI-Diagnostics of Plant Stress
title_sort ensuring explainability and dimensionality reduction in a multidimensional hsi world for early xai-diagnostics of plant stress
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10217094/
https://www.ncbi.nlm.nih.gov/pubmed/37238556
http://dx.doi.org/10.3390/e25050801
work_keys_str_mv AT lysovmaxim ensuringexplainabilityanddimensionalityreductioninamultidimensionalhsiworldforearlyxaidiagnosticsofplantstress
AT pukhkiykonstantin ensuringexplainabilityanddimensionalityreductioninamultidimensionalhsiworldforearlyxaidiagnosticsofplantstress
AT vasilievevgeny ensuringexplainabilityanddimensionalityreductioninamultidimensionalhsiworldforearlyxaidiagnosticsofplantstress
AT getmanskayaalexandra ensuringexplainabilityanddimensionalityreductioninamultidimensionalhsiworldforearlyxaidiagnosticsofplantstress
AT turlapovvadim ensuringexplainabilityanddimensionalityreductioninamultidimensionalhsiworldforearlyxaidiagnosticsofplantstress