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lncRNA TRHDE-AS1 Correlated with Genomic Landscape and Clinical Outcome in Glioma

The role of lncRNA in cancer development has received more and more attention in research. A variety of lncRNAs are associated with the occurrence and development of glioma. However, the role of TRHDE-AS1 in glioma is still unknown. In this study, we explored the role of TRHDE-AS1 in glioma through...

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Autores principales: Xie, Jinxuan, Lin, Yi, Li, Yajie, Fang, Aizhong, Li, Xin, Wang, Songlin, Li, Wenbin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10217926/
https://www.ncbi.nlm.nih.gov/pubmed/37239411
http://dx.doi.org/10.3390/genes14051052
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author Xie, Jinxuan
Lin, Yi
Li, Yajie
Fang, Aizhong
Li, Xin
Wang, Songlin
Li, Wenbin
author_facet Xie, Jinxuan
Lin, Yi
Li, Yajie
Fang, Aizhong
Li, Xin
Wang, Songlin
Li, Wenbin
author_sort Xie, Jinxuan
collection PubMed
description The role of lncRNA in cancer development has received more and more attention in research. A variety of lncRNAs are associated with the occurrence and development of glioma. However, the role of TRHDE-AS1 in glioma is still unknown. In this study, we explored the role of TRHDE-AS1 in glioma through bioinformatic methods. We first identified an association between TRHDE-AS1 and tumor prognosis in pan-cancer analysis. Subsequently, the expression levels of TRHDE-AS1 in various clinical types of glioma were compared, and significant differences were found in pathological classification, WHO classification, molecular classification, IDH mutation, and age stratification. We analyzed the genes co-expressed with TRHDE-AS1 in glioma. In the functional analysis of TRHDE-AS1, we found that TRHDE-AS1 may be involved in the regulation of synapse-related functions. In glioma cancer driver gene correlation analysis, it was also found that TRHDE-AS1 was significantly correlated with the expression levels of multiple driver genes such as TP53, BRAF, and IDH1. By comparing the mutant profiles of the high and low TRHDE-AS1 groups, we also found that there may be differences in TP53 and CIC gene mutations in low-grade gliomas. Subsequent correlation analysis between TRHDE-AS1 and glioma immune microenvironment showed that the expression level of TRHDE-AS1 was correlated with a variety of immune cells. Therefore, we believe that TRHDE-AS1 is involved in the occurrence and development of glioma and has the ability to predict the prognosis of glioma as a biomarker of glioma.
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spelling pubmed-102179262023-05-27 lncRNA TRHDE-AS1 Correlated with Genomic Landscape and Clinical Outcome in Glioma Xie, Jinxuan Lin, Yi Li, Yajie Fang, Aizhong Li, Xin Wang, Songlin Li, Wenbin Genes (Basel) Article The role of lncRNA in cancer development has received more and more attention in research. A variety of lncRNAs are associated with the occurrence and development of glioma. However, the role of TRHDE-AS1 in glioma is still unknown. In this study, we explored the role of TRHDE-AS1 in glioma through bioinformatic methods. We first identified an association between TRHDE-AS1 and tumor prognosis in pan-cancer analysis. Subsequently, the expression levels of TRHDE-AS1 in various clinical types of glioma were compared, and significant differences were found in pathological classification, WHO classification, molecular classification, IDH mutation, and age stratification. We analyzed the genes co-expressed with TRHDE-AS1 in glioma. In the functional analysis of TRHDE-AS1, we found that TRHDE-AS1 may be involved in the regulation of synapse-related functions. In glioma cancer driver gene correlation analysis, it was also found that TRHDE-AS1 was significantly correlated with the expression levels of multiple driver genes such as TP53, BRAF, and IDH1. By comparing the mutant profiles of the high and low TRHDE-AS1 groups, we also found that there may be differences in TP53 and CIC gene mutations in low-grade gliomas. Subsequent correlation analysis between TRHDE-AS1 and glioma immune microenvironment showed that the expression level of TRHDE-AS1 was correlated with a variety of immune cells. Therefore, we believe that TRHDE-AS1 is involved in the occurrence and development of glioma and has the ability to predict the prognosis of glioma as a biomarker of glioma. MDPI 2023-05-08 /pmc/articles/PMC10217926/ /pubmed/37239411 http://dx.doi.org/10.3390/genes14051052 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Xie, Jinxuan
Lin, Yi
Li, Yajie
Fang, Aizhong
Li, Xin
Wang, Songlin
Li, Wenbin
lncRNA TRHDE-AS1 Correlated with Genomic Landscape and Clinical Outcome in Glioma
title lncRNA TRHDE-AS1 Correlated with Genomic Landscape and Clinical Outcome in Glioma
title_full lncRNA TRHDE-AS1 Correlated with Genomic Landscape and Clinical Outcome in Glioma
title_fullStr lncRNA TRHDE-AS1 Correlated with Genomic Landscape and Clinical Outcome in Glioma
title_full_unstemmed lncRNA TRHDE-AS1 Correlated with Genomic Landscape and Clinical Outcome in Glioma
title_short lncRNA TRHDE-AS1 Correlated with Genomic Landscape and Clinical Outcome in Glioma
title_sort lncrna trhde-as1 correlated with genomic landscape and clinical outcome in glioma
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10217926/
https://www.ncbi.nlm.nih.gov/pubmed/37239411
http://dx.doi.org/10.3390/genes14051052
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