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Advanced Methods for Natural Products Discovery: Bioactivity Screening, Dereplication, Metabolomics Profiling, Genomic Sequencing, Databases and Informatic Tools, and Structure Elucidation

Natural Products (NP) are essential for the discovery of novel drugs and products for numerous biotechnological applications. The NP discovery process is expensive and time-consuming, having as major hurdles dereplication (early identification of known compounds) and structure elucidation, particula...

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Autores principales: Gaudêncio, Susana P., Bayram, Engin, Lukić Bilela, Lada, Cueto, Mercedes, Díaz-Marrero, Ana R., Haznedaroglu, Berat Z., Jimenez, Carlos, Mandalakis, Manolis, Pereira, Florbela, Reyes, Fernando, Tasdemir, Deniz
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10222211/
https://www.ncbi.nlm.nih.gov/pubmed/37233502
http://dx.doi.org/10.3390/md21050308
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author Gaudêncio, Susana P.
Bayram, Engin
Lukić Bilela, Lada
Cueto, Mercedes
Díaz-Marrero, Ana R.
Haznedaroglu, Berat Z.
Jimenez, Carlos
Mandalakis, Manolis
Pereira, Florbela
Reyes, Fernando
Tasdemir, Deniz
author_facet Gaudêncio, Susana P.
Bayram, Engin
Lukić Bilela, Lada
Cueto, Mercedes
Díaz-Marrero, Ana R.
Haznedaroglu, Berat Z.
Jimenez, Carlos
Mandalakis, Manolis
Pereira, Florbela
Reyes, Fernando
Tasdemir, Deniz
author_sort Gaudêncio, Susana P.
collection PubMed
description Natural Products (NP) are essential for the discovery of novel drugs and products for numerous biotechnological applications. The NP discovery process is expensive and time-consuming, having as major hurdles dereplication (early identification of known compounds) and structure elucidation, particularly the determination of the absolute configuration of metabolites with stereogenic centers. This review comprehensively focuses on recent technological and instrumental advances, highlighting the development of methods that alleviate these obstacles, paving the way for accelerating NP discovery towards biotechnological applications. Herein, we emphasize the most innovative high-throughput tools and methods for advancing bioactivity screening, NP chemical analysis, dereplication, metabolite profiling, metabolomics, genome sequencing and/or genomics approaches, databases, bioinformatics, chemoinformatics, and three-dimensional NP structure elucidation.
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spelling pubmed-102222112023-05-28 Advanced Methods for Natural Products Discovery: Bioactivity Screening, Dereplication, Metabolomics Profiling, Genomic Sequencing, Databases and Informatic Tools, and Structure Elucidation Gaudêncio, Susana P. Bayram, Engin Lukić Bilela, Lada Cueto, Mercedes Díaz-Marrero, Ana R. Haznedaroglu, Berat Z. Jimenez, Carlos Mandalakis, Manolis Pereira, Florbela Reyes, Fernando Tasdemir, Deniz Mar Drugs Review Natural Products (NP) are essential for the discovery of novel drugs and products for numerous biotechnological applications. The NP discovery process is expensive and time-consuming, having as major hurdles dereplication (early identification of known compounds) and structure elucidation, particularly the determination of the absolute configuration of metabolites with stereogenic centers. This review comprehensively focuses on recent technological and instrumental advances, highlighting the development of methods that alleviate these obstacles, paving the way for accelerating NP discovery towards biotechnological applications. Herein, we emphasize the most innovative high-throughput tools and methods for advancing bioactivity screening, NP chemical analysis, dereplication, metabolite profiling, metabolomics, genome sequencing and/or genomics approaches, databases, bioinformatics, chemoinformatics, and three-dimensional NP structure elucidation. MDPI 2023-05-19 /pmc/articles/PMC10222211/ /pubmed/37233502 http://dx.doi.org/10.3390/md21050308 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Review
Gaudêncio, Susana P.
Bayram, Engin
Lukić Bilela, Lada
Cueto, Mercedes
Díaz-Marrero, Ana R.
Haznedaroglu, Berat Z.
Jimenez, Carlos
Mandalakis, Manolis
Pereira, Florbela
Reyes, Fernando
Tasdemir, Deniz
Advanced Methods for Natural Products Discovery: Bioactivity Screening, Dereplication, Metabolomics Profiling, Genomic Sequencing, Databases and Informatic Tools, and Structure Elucidation
title Advanced Methods for Natural Products Discovery: Bioactivity Screening, Dereplication, Metabolomics Profiling, Genomic Sequencing, Databases and Informatic Tools, and Structure Elucidation
title_full Advanced Methods for Natural Products Discovery: Bioactivity Screening, Dereplication, Metabolomics Profiling, Genomic Sequencing, Databases and Informatic Tools, and Structure Elucidation
title_fullStr Advanced Methods for Natural Products Discovery: Bioactivity Screening, Dereplication, Metabolomics Profiling, Genomic Sequencing, Databases and Informatic Tools, and Structure Elucidation
title_full_unstemmed Advanced Methods for Natural Products Discovery: Bioactivity Screening, Dereplication, Metabolomics Profiling, Genomic Sequencing, Databases and Informatic Tools, and Structure Elucidation
title_short Advanced Methods for Natural Products Discovery: Bioactivity Screening, Dereplication, Metabolomics Profiling, Genomic Sequencing, Databases and Informatic Tools, and Structure Elucidation
title_sort advanced methods for natural products discovery: bioactivity screening, dereplication, metabolomics profiling, genomic sequencing, databases and informatic tools, and structure elucidation
topic Review
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10222211/
https://www.ncbi.nlm.nih.gov/pubmed/37233502
http://dx.doi.org/10.3390/md21050308
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