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Advanced Methods for Natural Products Discovery: Bioactivity Screening, Dereplication, Metabolomics Profiling, Genomic Sequencing, Databases and Informatic Tools, and Structure Elucidation
Natural Products (NP) are essential for the discovery of novel drugs and products for numerous biotechnological applications. The NP discovery process is expensive and time-consuming, having as major hurdles dereplication (early identification of known compounds) and structure elucidation, particula...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10222211/ https://www.ncbi.nlm.nih.gov/pubmed/37233502 http://dx.doi.org/10.3390/md21050308 |
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author | Gaudêncio, Susana P. Bayram, Engin Lukić Bilela, Lada Cueto, Mercedes Díaz-Marrero, Ana R. Haznedaroglu, Berat Z. Jimenez, Carlos Mandalakis, Manolis Pereira, Florbela Reyes, Fernando Tasdemir, Deniz |
author_facet | Gaudêncio, Susana P. Bayram, Engin Lukić Bilela, Lada Cueto, Mercedes Díaz-Marrero, Ana R. Haznedaroglu, Berat Z. Jimenez, Carlos Mandalakis, Manolis Pereira, Florbela Reyes, Fernando Tasdemir, Deniz |
author_sort | Gaudêncio, Susana P. |
collection | PubMed |
description | Natural Products (NP) are essential for the discovery of novel drugs and products for numerous biotechnological applications. The NP discovery process is expensive and time-consuming, having as major hurdles dereplication (early identification of known compounds) and structure elucidation, particularly the determination of the absolute configuration of metabolites with stereogenic centers. This review comprehensively focuses on recent technological and instrumental advances, highlighting the development of methods that alleviate these obstacles, paving the way for accelerating NP discovery towards biotechnological applications. Herein, we emphasize the most innovative high-throughput tools and methods for advancing bioactivity screening, NP chemical analysis, dereplication, metabolite profiling, metabolomics, genome sequencing and/or genomics approaches, databases, bioinformatics, chemoinformatics, and three-dimensional NP structure elucidation. |
format | Online Article Text |
id | pubmed-10222211 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-102222112023-05-28 Advanced Methods for Natural Products Discovery: Bioactivity Screening, Dereplication, Metabolomics Profiling, Genomic Sequencing, Databases and Informatic Tools, and Structure Elucidation Gaudêncio, Susana P. Bayram, Engin Lukić Bilela, Lada Cueto, Mercedes Díaz-Marrero, Ana R. Haznedaroglu, Berat Z. Jimenez, Carlos Mandalakis, Manolis Pereira, Florbela Reyes, Fernando Tasdemir, Deniz Mar Drugs Review Natural Products (NP) are essential for the discovery of novel drugs and products for numerous biotechnological applications. The NP discovery process is expensive and time-consuming, having as major hurdles dereplication (early identification of known compounds) and structure elucidation, particularly the determination of the absolute configuration of metabolites with stereogenic centers. This review comprehensively focuses on recent technological and instrumental advances, highlighting the development of methods that alleviate these obstacles, paving the way for accelerating NP discovery towards biotechnological applications. Herein, we emphasize the most innovative high-throughput tools and methods for advancing bioactivity screening, NP chemical analysis, dereplication, metabolite profiling, metabolomics, genome sequencing and/or genomics approaches, databases, bioinformatics, chemoinformatics, and three-dimensional NP structure elucidation. MDPI 2023-05-19 /pmc/articles/PMC10222211/ /pubmed/37233502 http://dx.doi.org/10.3390/md21050308 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Review Gaudêncio, Susana P. Bayram, Engin Lukić Bilela, Lada Cueto, Mercedes Díaz-Marrero, Ana R. Haznedaroglu, Berat Z. Jimenez, Carlos Mandalakis, Manolis Pereira, Florbela Reyes, Fernando Tasdemir, Deniz Advanced Methods for Natural Products Discovery: Bioactivity Screening, Dereplication, Metabolomics Profiling, Genomic Sequencing, Databases and Informatic Tools, and Structure Elucidation |
title | Advanced Methods for Natural Products Discovery: Bioactivity Screening, Dereplication, Metabolomics Profiling, Genomic Sequencing, Databases and Informatic Tools, and Structure Elucidation |
title_full | Advanced Methods for Natural Products Discovery: Bioactivity Screening, Dereplication, Metabolomics Profiling, Genomic Sequencing, Databases and Informatic Tools, and Structure Elucidation |
title_fullStr | Advanced Methods for Natural Products Discovery: Bioactivity Screening, Dereplication, Metabolomics Profiling, Genomic Sequencing, Databases and Informatic Tools, and Structure Elucidation |
title_full_unstemmed | Advanced Methods for Natural Products Discovery: Bioactivity Screening, Dereplication, Metabolomics Profiling, Genomic Sequencing, Databases and Informatic Tools, and Structure Elucidation |
title_short | Advanced Methods for Natural Products Discovery: Bioactivity Screening, Dereplication, Metabolomics Profiling, Genomic Sequencing, Databases and Informatic Tools, and Structure Elucidation |
title_sort | advanced methods for natural products discovery: bioactivity screening, dereplication, metabolomics profiling, genomic sequencing, databases and informatic tools, and structure elucidation |
topic | Review |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10222211/ https://www.ncbi.nlm.nih.gov/pubmed/37233502 http://dx.doi.org/10.3390/md21050308 |
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