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Enhancement of Ambient Mass Spectrometry Imaging Data by Image Restoration

Mass spectrometry imaging (MSI) has been a key driver of groundbreaking discoveries in a number of fields since its inception more than 50 years ago. Recently, MSI development trends have shifted towards ambient MSI (AMSI) as the removal of sample-preparation steps and the possibility of analysing b...

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Autores principales: Xiang, Yuchen, Metodiev, Martin, Wang, Meiqi, Cao, Boxuan, Bunch, Josephine, Takats, Zoltan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10222327/
https://www.ncbi.nlm.nih.gov/pubmed/37233710
http://dx.doi.org/10.3390/metabo13050669
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author Xiang, Yuchen
Metodiev, Martin
Wang, Meiqi
Cao, Boxuan
Bunch, Josephine
Takats, Zoltan
author_facet Xiang, Yuchen
Metodiev, Martin
Wang, Meiqi
Cao, Boxuan
Bunch, Josephine
Takats, Zoltan
author_sort Xiang, Yuchen
collection PubMed
description Mass spectrometry imaging (MSI) has been a key driver of groundbreaking discoveries in a number of fields since its inception more than 50 years ago. Recently, MSI development trends have shifted towards ambient MSI (AMSI) as the removal of sample-preparation steps and the possibility of analysing biological specimens in their natural state have drawn the attention of multiple groups across the world. Nevertheless, the lack of spatial resolution has been cited as one of the main limitations of AMSI. While significant research effort has presented hardware solutions for improving the resolution, software solutions are often overlooked, although they can usually be applied in a cost-effective manner after image acquisition. In this vein, we present two computational methods that we have developed to directly enhance the image resolution post-acquisition. Robust and quantitative resolution improvement is demonstrated for 12 cases of openly accessible datasets across laboratories around the globe. Using the same universally applicable Fourier imaging model, we discuss the possibility of true super-resolution by software for future studies.
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spelling pubmed-102223272023-05-28 Enhancement of Ambient Mass Spectrometry Imaging Data by Image Restoration Xiang, Yuchen Metodiev, Martin Wang, Meiqi Cao, Boxuan Bunch, Josephine Takats, Zoltan Metabolites Article Mass spectrometry imaging (MSI) has been a key driver of groundbreaking discoveries in a number of fields since its inception more than 50 years ago. Recently, MSI development trends have shifted towards ambient MSI (AMSI) as the removal of sample-preparation steps and the possibility of analysing biological specimens in their natural state have drawn the attention of multiple groups across the world. Nevertheless, the lack of spatial resolution has been cited as one of the main limitations of AMSI. While significant research effort has presented hardware solutions for improving the resolution, software solutions are often overlooked, although they can usually be applied in a cost-effective manner after image acquisition. In this vein, we present two computational methods that we have developed to directly enhance the image resolution post-acquisition. Robust and quantitative resolution improvement is demonstrated for 12 cases of openly accessible datasets across laboratories around the globe. Using the same universally applicable Fourier imaging model, we discuss the possibility of true super-resolution by software for future studies. MDPI 2023-05-19 /pmc/articles/PMC10222327/ /pubmed/37233710 http://dx.doi.org/10.3390/metabo13050669 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Xiang, Yuchen
Metodiev, Martin
Wang, Meiqi
Cao, Boxuan
Bunch, Josephine
Takats, Zoltan
Enhancement of Ambient Mass Spectrometry Imaging Data by Image Restoration
title Enhancement of Ambient Mass Spectrometry Imaging Data by Image Restoration
title_full Enhancement of Ambient Mass Spectrometry Imaging Data by Image Restoration
title_fullStr Enhancement of Ambient Mass Spectrometry Imaging Data by Image Restoration
title_full_unstemmed Enhancement of Ambient Mass Spectrometry Imaging Data by Image Restoration
title_short Enhancement of Ambient Mass Spectrometry Imaging Data by Image Restoration
title_sort enhancement of ambient mass spectrometry imaging data by image restoration
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10222327/
https://www.ncbi.nlm.nih.gov/pubmed/37233710
http://dx.doi.org/10.3390/metabo13050669
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