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The System of Self-Consistent Models: QSAR Analysis of Drug-Induced Liver Toxicity
Removing a drug-like substance that can cause drug-induced liver injury from the drug discovery process is a significant task for medicinal chemistry. In silico models can facilitate this process. Semi-correlation is an approach to building in silico models representing the prediction in the active...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10222497/ https://www.ncbi.nlm.nih.gov/pubmed/37235234 http://dx.doi.org/10.3390/toxics11050419 |
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author | Toropova, Alla P. Toropov, Andrey A. Roncaglioni, Alessandra Benfenati, Emilio |
author_facet | Toropova, Alla P. Toropov, Andrey A. Roncaglioni, Alessandra Benfenati, Emilio |
author_sort | Toropova, Alla P. |
collection | PubMed |
description | Removing a drug-like substance that can cause drug-induced liver injury from the drug discovery process is a significant task for medicinal chemistry. In silico models can facilitate this process. Semi-correlation is an approach to building in silico models representing the prediction in the active (1)—inactive (0) format. The so-called system of self-consistent models has been suggested as an approach for two tasks: (i) building up a model and (ii) estimating its predictive potential. However, this approach has been tested so far for regression models. Here, the approach is applied to building up and estimating a categorical hepatotoxicity model using the CORAL software. This new process yields good results: sensitivity = 0.77, specificity = 0.75, accuracy = 0.76, and Matthew correlation coefficient = 0.51 (all compounds) and sensitivity = 0.83, specificity = 0.81, accuracy = 0.83 and Matthew correlation coefficient = 0.63 (validation set). |
format | Online Article Text |
id | pubmed-10222497 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-102224972023-05-28 The System of Self-Consistent Models: QSAR Analysis of Drug-Induced Liver Toxicity Toropova, Alla P. Toropov, Andrey A. Roncaglioni, Alessandra Benfenati, Emilio Toxics Article Removing a drug-like substance that can cause drug-induced liver injury from the drug discovery process is a significant task for medicinal chemistry. In silico models can facilitate this process. Semi-correlation is an approach to building in silico models representing the prediction in the active (1)—inactive (0) format. The so-called system of self-consistent models has been suggested as an approach for two tasks: (i) building up a model and (ii) estimating its predictive potential. However, this approach has been tested so far for regression models. Here, the approach is applied to building up and estimating a categorical hepatotoxicity model using the CORAL software. This new process yields good results: sensitivity = 0.77, specificity = 0.75, accuracy = 0.76, and Matthew correlation coefficient = 0.51 (all compounds) and sensitivity = 0.83, specificity = 0.81, accuracy = 0.83 and Matthew correlation coefficient = 0.63 (validation set). MDPI 2023-04-29 /pmc/articles/PMC10222497/ /pubmed/37235234 http://dx.doi.org/10.3390/toxics11050419 Text en © 2023 by the authors. https://creativecommons.org/licenses/by/4.0/Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (https://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Toropova, Alla P. Toropov, Andrey A. Roncaglioni, Alessandra Benfenati, Emilio The System of Self-Consistent Models: QSAR Analysis of Drug-Induced Liver Toxicity |
title | The System of Self-Consistent Models: QSAR Analysis of Drug-Induced Liver Toxicity |
title_full | The System of Self-Consistent Models: QSAR Analysis of Drug-Induced Liver Toxicity |
title_fullStr | The System of Self-Consistent Models: QSAR Analysis of Drug-Induced Liver Toxicity |
title_full_unstemmed | The System of Self-Consistent Models: QSAR Analysis of Drug-Induced Liver Toxicity |
title_short | The System of Self-Consistent Models: QSAR Analysis of Drug-Induced Liver Toxicity |
title_sort | system of self-consistent models: qsar analysis of drug-induced liver toxicity |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10222497/ https://www.ncbi.nlm.nih.gov/pubmed/37235234 http://dx.doi.org/10.3390/toxics11050419 |
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