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Deep learning enables satellite-based monitoring of large populations of terrestrial mammals across heterogeneous landscape

New satellite remote sensing and machine learning techniques offer untapped possibilities to monitor global biodiversity with unprecedented speed and precision. These efficiencies promise to reveal novel ecological insights at spatial scales which are germane to the management of populations and ent...

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Autores principales: Wu, Zijing, Zhang, Ce, Gu, Xiaowei, Duporge, Isla, Hughey, Lacey F., Stabach, Jared A., Skidmore, Andrew K., Hopcraft, J. Grant C., Lee, Stephen J., Atkinson, Peter M., McCauley, Douglas J., Lamprey, Richard, Ngene, Shadrack, Wang, Tiejun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10224963/
https://www.ncbi.nlm.nih.gov/pubmed/37244940
http://dx.doi.org/10.1038/s41467-023-38901-y
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author Wu, Zijing
Zhang, Ce
Gu, Xiaowei
Duporge, Isla
Hughey, Lacey F.
Stabach, Jared A.
Skidmore, Andrew K.
Hopcraft, J. Grant C.
Lee, Stephen J.
Atkinson, Peter M.
McCauley, Douglas J.
Lamprey, Richard
Ngene, Shadrack
Wang, Tiejun
author_facet Wu, Zijing
Zhang, Ce
Gu, Xiaowei
Duporge, Isla
Hughey, Lacey F.
Stabach, Jared A.
Skidmore, Andrew K.
Hopcraft, J. Grant C.
Lee, Stephen J.
Atkinson, Peter M.
McCauley, Douglas J.
Lamprey, Richard
Ngene, Shadrack
Wang, Tiejun
author_sort Wu, Zijing
collection PubMed
description New satellite remote sensing and machine learning techniques offer untapped possibilities to monitor global biodiversity with unprecedented speed and precision. These efficiencies promise to reveal novel ecological insights at spatial scales which are germane to the management of populations and entire ecosystems. Here, we present a robust transferable deep learning pipeline to automatically locate and count large herds of migratory ungulates (wildebeest and zebra) in the Serengeti-Mara ecosystem using fine-resolution (38-50 cm) satellite imagery. The results achieve accurate detection of nearly 500,000 individuals across thousands of square kilometers and multiple habitat types, with an overall F1-score of 84.75% (Precision: 87.85%, Recall: 81.86%). This research demonstrates the capability of satellite remote sensing and machine learning techniques to automatically and accurately count very large populations of terrestrial mammals across a highly heterogeneous landscape. We also discuss the potential for satellite-derived species detections to advance basic understanding of animal behavior and ecology.
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spelling pubmed-102249632023-05-29 Deep learning enables satellite-based monitoring of large populations of terrestrial mammals across heterogeneous landscape Wu, Zijing Zhang, Ce Gu, Xiaowei Duporge, Isla Hughey, Lacey F. Stabach, Jared A. Skidmore, Andrew K. Hopcraft, J. Grant C. Lee, Stephen J. Atkinson, Peter M. McCauley, Douglas J. Lamprey, Richard Ngene, Shadrack Wang, Tiejun Nat Commun Article New satellite remote sensing and machine learning techniques offer untapped possibilities to monitor global biodiversity with unprecedented speed and precision. These efficiencies promise to reveal novel ecological insights at spatial scales which are germane to the management of populations and entire ecosystems. Here, we present a robust transferable deep learning pipeline to automatically locate and count large herds of migratory ungulates (wildebeest and zebra) in the Serengeti-Mara ecosystem using fine-resolution (38-50 cm) satellite imagery. The results achieve accurate detection of nearly 500,000 individuals across thousands of square kilometers and multiple habitat types, with an overall F1-score of 84.75% (Precision: 87.85%, Recall: 81.86%). This research demonstrates the capability of satellite remote sensing and machine learning techniques to automatically and accurately count very large populations of terrestrial mammals across a highly heterogeneous landscape. We also discuss the potential for satellite-derived species detections to advance basic understanding of animal behavior and ecology. Nature Publishing Group UK 2023-05-27 /pmc/articles/PMC10224963/ /pubmed/37244940 http://dx.doi.org/10.1038/s41467-023-38901-y Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Wu, Zijing
Zhang, Ce
Gu, Xiaowei
Duporge, Isla
Hughey, Lacey F.
Stabach, Jared A.
Skidmore, Andrew K.
Hopcraft, J. Grant C.
Lee, Stephen J.
Atkinson, Peter M.
McCauley, Douglas J.
Lamprey, Richard
Ngene, Shadrack
Wang, Tiejun
Deep learning enables satellite-based monitoring of large populations of terrestrial mammals across heterogeneous landscape
title Deep learning enables satellite-based monitoring of large populations of terrestrial mammals across heterogeneous landscape
title_full Deep learning enables satellite-based monitoring of large populations of terrestrial mammals across heterogeneous landscape
title_fullStr Deep learning enables satellite-based monitoring of large populations of terrestrial mammals across heterogeneous landscape
title_full_unstemmed Deep learning enables satellite-based monitoring of large populations of terrestrial mammals across heterogeneous landscape
title_short Deep learning enables satellite-based monitoring of large populations of terrestrial mammals across heterogeneous landscape
title_sort deep learning enables satellite-based monitoring of large populations of terrestrial mammals across heterogeneous landscape
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10224963/
https://www.ncbi.nlm.nih.gov/pubmed/37244940
http://dx.doi.org/10.1038/s41467-023-38901-y
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