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Deep learning generates synthetic cancer histology for explainability and education
Artificial intelligence methods including deep neural networks (DNN) can provide rapid molecular classification of tumors from routine histology with accuracy that matches or exceeds human pathologists. Discerning how neural networks make their predictions remains a significant challenge, but explai...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10227067/ https://www.ncbi.nlm.nih.gov/pubmed/37248379 http://dx.doi.org/10.1038/s41698-023-00399-4 |
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author | Dolezal, James M. Wolk, Rachelle Hieromnimon, Hanna M. Howard, Frederick M. Srisuwananukorn, Andrew Karpeyev, Dmitry Ramesh, Siddhi Kochanny, Sara Kwon, Jung Woo Agni, Meghana Simon, Richard C. Desai, Chandni Kherallah, Raghad Nguyen, Tung D. Schulte, Jefree J. Cole, Kimberly Khramtsova, Galina Garassino, Marina Chiara Husain, Aliya N. Li, Huihua Grossman, Robert Cipriani, Nicole A. Pearson, Alexander T. |
author_facet | Dolezal, James M. Wolk, Rachelle Hieromnimon, Hanna M. Howard, Frederick M. Srisuwananukorn, Andrew Karpeyev, Dmitry Ramesh, Siddhi Kochanny, Sara Kwon, Jung Woo Agni, Meghana Simon, Richard C. Desai, Chandni Kherallah, Raghad Nguyen, Tung D. Schulte, Jefree J. Cole, Kimberly Khramtsova, Galina Garassino, Marina Chiara Husain, Aliya N. Li, Huihua Grossman, Robert Cipriani, Nicole A. Pearson, Alexander T. |
author_sort | Dolezal, James M. |
collection | PubMed |
description | Artificial intelligence methods including deep neural networks (DNN) can provide rapid molecular classification of tumors from routine histology with accuracy that matches or exceeds human pathologists. Discerning how neural networks make their predictions remains a significant challenge, but explainability tools help provide insights into what models have learned when corresponding histologic features are poorly defined. Here, we present a method for improving explainability of DNN models using synthetic histology generated by a conditional generative adversarial network (cGAN). We show that cGANs generate high-quality synthetic histology images that can be leveraged for explaining DNN models trained to classify molecularly-subtyped tumors, exposing histologic features associated with molecular state. Fine-tuning synthetic histology through class and layer blending illustrates nuanced morphologic differences between tumor subtypes. Finally, we demonstrate the use of synthetic histology for augmenting pathologist-in-training education, showing that these intuitive visualizations can reinforce and improve understanding of histologic manifestations of tumor biology. |
format | Online Article Text |
id | pubmed-10227067 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-102270672023-05-31 Deep learning generates synthetic cancer histology for explainability and education Dolezal, James M. Wolk, Rachelle Hieromnimon, Hanna M. Howard, Frederick M. Srisuwananukorn, Andrew Karpeyev, Dmitry Ramesh, Siddhi Kochanny, Sara Kwon, Jung Woo Agni, Meghana Simon, Richard C. Desai, Chandni Kherallah, Raghad Nguyen, Tung D. Schulte, Jefree J. Cole, Kimberly Khramtsova, Galina Garassino, Marina Chiara Husain, Aliya N. Li, Huihua Grossman, Robert Cipriani, Nicole A. Pearson, Alexander T. NPJ Precis Oncol Article Artificial intelligence methods including deep neural networks (DNN) can provide rapid molecular classification of tumors from routine histology with accuracy that matches or exceeds human pathologists. Discerning how neural networks make their predictions remains a significant challenge, but explainability tools help provide insights into what models have learned when corresponding histologic features are poorly defined. Here, we present a method for improving explainability of DNN models using synthetic histology generated by a conditional generative adversarial network (cGAN). We show that cGANs generate high-quality synthetic histology images that can be leveraged for explaining DNN models trained to classify molecularly-subtyped tumors, exposing histologic features associated with molecular state. Fine-tuning synthetic histology through class and layer blending illustrates nuanced morphologic differences between tumor subtypes. Finally, we demonstrate the use of synthetic histology for augmenting pathologist-in-training education, showing that these intuitive visualizations can reinforce and improve understanding of histologic manifestations of tumor biology. Nature Publishing Group UK 2023-05-29 /pmc/articles/PMC10227067/ /pubmed/37248379 http://dx.doi.org/10.1038/s41698-023-00399-4 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Article Dolezal, James M. Wolk, Rachelle Hieromnimon, Hanna M. Howard, Frederick M. Srisuwananukorn, Andrew Karpeyev, Dmitry Ramesh, Siddhi Kochanny, Sara Kwon, Jung Woo Agni, Meghana Simon, Richard C. Desai, Chandni Kherallah, Raghad Nguyen, Tung D. Schulte, Jefree J. Cole, Kimberly Khramtsova, Galina Garassino, Marina Chiara Husain, Aliya N. Li, Huihua Grossman, Robert Cipriani, Nicole A. Pearson, Alexander T. Deep learning generates synthetic cancer histology for explainability and education |
title | Deep learning generates synthetic cancer histology for explainability and education |
title_full | Deep learning generates synthetic cancer histology for explainability and education |
title_fullStr | Deep learning generates synthetic cancer histology for explainability and education |
title_full_unstemmed | Deep learning generates synthetic cancer histology for explainability and education |
title_short | Deep learning generates synthetic cancer histology for explainability and education |
title_sort | deep learning generates synthetic cancer histology for explainability and education |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10227067/ https://www.ncbi.nlm.nih.gov/pubmed/37248379 http://dx.doi.org/10.1038/s41698-023-00399-4 |
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