Cargando…
Neutrophil extracellular trap is an important connection between hemodialysis and acute myocardial infarction
The incidence of acute myocardial infarction (AMI) in hemodialysis (HD) patients is high and the prognosis is extremely poor. However, the potential connection between HD and AMI, and its regulatory mechanisms remain unclear. In this study, the gene expression profiles of HD (GSE15072) and AMI (GSE6...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Taylor & Francis
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10228304/ https://www.ncbi.nlm.nih.gov/pubmed/37246754 http://dx.doi.org/10.1080/0886022X.2023.2216307 |
_version_ | 1785050937434308608 |
---|---|
author | Yang, Yue Jiao, Yuan-yuan Zhang, Zheng Zhuo, Li Li, Wen-ge |
author_facet | Yang, Yue Jiao, Yuan-yuan Zhang, Zheng Zhuo, Li Li, Wen-ge |
author_sort | Yang, Yue |
collection | PubMed |
description | The incidence of acute myocardial infarction (AMI) in hemodialysis (HD) patients is high and the prognosis is extremely poor. However, the potential connection between HD and AMI, and its regulatory mechanisms remain unclear. In this study, the gene expression profiles of HD (GSE15072) and AMI (GSE66360) were downloaded from the Gene Expression Omnibus database, common differentially expressed genes (DEGs) were obtained using the limma R package, the biological functions were analyzed according to Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses, machine learning was conducted to identify hub genes. Receiver operating characteristic curves and gene set enrichment analyses were used to explore the characters and biological function of hub genes, networks were used for candidate identification of transcription factor (TF), microRNA (miRNA), and drug. After a total of 255 common DEGs were selected, GO and KEGG analyses indicated that neutrophil extracellular trap (NET) may be a potential connection between HD and AMI, LILRB2, S100A12, CYBB, ITGAM, and PPIF were finally identified as hub genes. The area under curve of LILRB2, S100A12, and PPIF was higher than 0.8 in both datasets. Networks show the relationship between hub genes, TF, and miRNA, also the relationship between potential drugs and protein. In conclusion, NETs may be the potential connection between AMI and HD. The potential hub gene, signaling pathways, and drugs provided by this study may contribute to future AMI prevention and intervention in HD patients. |
format | Online Article Text |
id | pubmed-10228304 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Taylor & Francis |
record_format | MEDLINE/PubMed |
spelling | pubmed-102283042023-05-31 Neutrophil extracellular trap is an important connection between hemodialysis and acute myocardial infarction Yang, Yue Jiao, Yuan-yuan Zhang, Zheng Zhuo, Li Li, Wen-ge Ren Fail Laboratory Study The incidence of acute myocardial infarction (AMI) in hemodialysis (HD) patients is high and the prognosis is extremely poor. However, the potential connection between HD and AMI, and its regulatory mechanisms remain unclear. In this study, the gene expression profiles of HD (GSE15072) and AMI (GSE66360) were downloaded from the Gene Expression Omnibus database, common differentially expressed genes (DEGs) were obtained using the limma R package, the biological functions were analyzed according to Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses, machine learning was conducted to identify hub genes. Receiver operating characteristic curves and gene set enrichment analyses were used to explore the characters and biological function of hub genes, networks were used for candidate identification of transcription factor (TF), microRNA (miRNA), and drug. After a total of 255 common DEGs were selected, GO and KEGG analyses indicated that neutrophil extracellular trap (NET) may be a potential connection between HD and AMI, LILRB2, S100A12, CYBB, ITGAM, and PPIF were finally identified as hub genes. The area under curve of LILRB2, S100A12, and PPIF was higher than 0.8 in both datasets. Networks show the relationship between hub genes, TF, and miRNA, also the relationship between potential drugs and protein. In conclusion, NETs may be the potential connection between AMI and HD. The potential hub gene, signaling pathways, and drugs provided by this study may contribute to future AMI prevention and intervention in HD patients. Taylor & Francis 2023-05-29 /pmc/articles/PMC10228304/ /pubmed/37246754 http://dx.doi.org/10.1080/0886022X.2023.2216307 Text en © 2023 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group https://creativecommons.org/licenses/by-nc/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (http://creativecommons.org/licenses/by-nc/4.0/ (https://creativecommons.org/licenses/by-nc/4.0/) ), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. The terms on which this article has been published allow the posting of the Accepted Manuscript in a repository by the author(s) or with their consent. |
spellingShingle | Laboratory Study Yang, Yue Jiao, Yuan-yuan Zhang, Zheng Zhuo, Li Li, Wen-ge Neutrophil extracellular trap is an important connection between hemodialysis and acute myocardial infarction |
title | Neutrophil extracellular trap is an important connection between hemodialysis and acute myocardial infarction |
title_full | Neutrophil extracellular trap is an important connection between hemodialysis and acute myocardial infarction |
title_fullStr | Neutrophil extracellular trap is an important connection between hemodialysis and acute myocardial infarction |
title_full_unstemmed | Neutrophil extracellular trap is an important connection between hemodialysis and acute myocardial infarction |
title_short | Neutrophil extracellular trap is an important connection between hemodialysis and acute myocardial infarction |
title_sort | neutrophil extracellular trap is an important connection between hemodialysis and acute myocardial infarction |
topic | Laboratory Study |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10228304/ https://www.ncbi.nlm.nih.gov/pubmed/37246754 http://dx.doi.org/10.1080/0886022X.2023.2216307 |
work_keys_str_mv | AT yangyue neutrophilextracellulartrapisanimportantconnectionbetweenhemodialysisandacutemyocardialinfarction AT jiaoyuanyuan neutrophilextracellulartrapisanimportantconnectionbetweenhemodialysisandacutemyocardialinfarction AT zhangzheng neutrophilextracellulartrapisanimportantconnectionbetweenhemodialysisandacutemyocardialinfarction AT zhuoli neutrophilextracellulartrapisanimportantconnectionbetweenhemodialysisandacutemyocardialinfarction AT liwenge neutrophilextracellulartrapisanimportantconnectionbetweenhemodialysisandacutemyocardialinfarction |