Cargando…

PacBio full-length transcriptome analysis provides new insights into transcription of chloroplast genomes

Chloroplast and mitochondrial DNA (cpDNA and mtDNA) are apart from nuclear DNA (nuDNA) in a eukaryotic cell. The transcription system of chloroplasts differs from those of mitochondria and eukaryotes. In contrast to nuDNA and animal mtDNA, the transcription of cpDNA is still not well understood, pri...

Descripción completa

Detalles Bibliográficos
Autores principales:	Shi, Jinsong, Yan, Shuangyong, Li, Wenjing, Yang, Xiurong, Cui, Zhongqiu, Li, Junling, Li, Guangsheng, Li, Yuejiao, Hu, Yanping, Gao, Shan
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Taylor & Francis 2023
Materias:	Research Paper
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10228390/ https://www.ncbi.nlm.nih.gov/pubmed/37231782 http://dx.doi.org/10.1080/15476286.2023.2214435

Ejemplares similares

The PacBio Full-Length Transcriptome of the Tea Aphid as a Reference Resource
por: Hong, Feng, et al.
Publicado: (2020)

PacBio Full-Length Transcriptome of a Tetraploid Sinocyclocheilus multipunctatus Provides Insights into the Evolution of Cavefish
por: Zhang, Renyi, et al.
Publicado: (2023)

PacBio full-length transcriptome of wild apple (Malus sieversii) provides insights into canker disease dynamic response
por: Liu, Xiaojie, et al.
Publicado: (2021)

PacBio Single-Molecule Long-Read Sequencing Provides New Light on the Complexity of Full-Length Transcripts in Cattle
por: Chang, Tianpeng, et al.
Publicado: (2021)

PacBio Full-Length Transcriptome Sequencing Reveals the Mechanism of Salt Stress Response in Sonneratia apetala
por: Chen, Beibei, et al.
Publicado: (2023)

Reconstruction of the full-length transcriptome atlas using PacBio Iso-Seq provides insight into the alternative splicing in Gossypium australe
por: Feng, Shouli, et al.
Publicado: (2019)

Evaluation of PacBio sequencing for full-length bacterial 16S rRNA gene classification
por: Wagner, Josef, et al.
Publicado: (2016)

Assembly of the durian chloroplast genome using long PacBio reads
por: Shearman, Jeremy R., et al.
Publicado: (2020)

Complete chloroplast genome sequence of Populus euphratica from PacBio Sequel platform
por: Jiang, Zhen-Bo, et al.
Publicado: (2021)

Comprehensive analysis of structural variants in chickens using PacBio sequencing
por: Zhang, Jinxin, et al.
Publicado: (2022)

Flexible and Scalable Full‐Length CYP2D6 Long Amplicon PacBio Sequencing
por: Buermans, Henk P.J., et al.
Publicado: (2017)

PacBio Sequencing and Its Applications
por: Rhoads, Anthony, et al.
Publicado: (2015)

PacBio Full-Length and Illumina Transcriptomes of the Gill Reveal the Molecular Response of Corbicula fluminea under Aerial Exposure
por: Zhang, Ting, et al.
Publicado: (2022)

PacBio single-molecule long-read sequencing provides new insights into the complexity of full-length transcripts in oriental river prawn, macrobrachium nipponense
por: Mou, Cheng-Yan, et al.
Publicado: (2023)

Revealing the transcriptomic complexity of switchgrass by PacBio long-read sequencing
por: Zuo, Chunman, et al.
Publicado: (2018)

Gene Expression and Isoform Identification of PacBio Full-Length cDNA Sequences for Berberine Biosynthesis in Berberis koreana
por: Roy, Neha Samir, et al.
Publicado: (2021)

Complete chloroplast genome sequence of Populus pruinosa Schrenk from PacBio Sequel II Platform
por: Gai, Zhong-Shuai, et al.
Publicado: (2020)

An evaluation of the PacBio RS platform for sequencing and de novo assembly of a chloroplast genome
por: Ferrarini, Marco, et al.
Publicado: (2013)

The complete chloroplast genome sequence of Actinidia arguta using the PacBio RS II platform
por: Lin, Miaomiao, et al.
Publicado: (2018)

Complete chloroplast genome sequence of Carthamus tinctorius L. from PacBio Sequel Platform
por: Wu, Zhi-Hua, et al.
Publicado: (2019)

Comparative transcriptome analysis of dioecious floral development in Trachycarpus fortunei using Illumina and PacBio SMRT sequencing
por: Xiao, Feng, et al.
Publicado: (2023)

Aethionema arabicum genome annotation using PacBio full‐length transcripts provides a valuable resource for seed dormancy and Brassicaceae evolution research
por: Fernandez‐Pozo, Noe, et al.
Publicado: (2021)

HISEA: HIerarchical SEed Aligner for PacBio data
por: Khiste, Nilesh, et al.
Publicado: (2017)

The Complete Chloroplast Genome Sequence of the Medicinal Plant Swertia mussotii Using the PacBio RS II Platform
por: Xiang, Beibei, et al.
Publicado: (2016)

Comparison of Transcriptome between Tolerant and Susceptible Rice Cultivar Reveals Positive and Negative Regulators of Response to Rhizoctonia solani in Rice
por: Yang, Xiurong, et al.
Publicado: (2023)

PacBio full-length sequencing integrated with RNA-seq reveals the molecular mechanism of waterlogging and its recovery in Paeonia ostii
por: Zhang, Xiaoxiao, et al.
Publicado: (2022)

The complete chloroplast genome of greater duckweed (Spirodela polyrhiza 7498) using PacBio long reads: insights into the chloroplast evolution and transcription regulation
por: Zhang, Yating, et al.
Publicado: (2020)

Chloroplast genome of Aconitum barbatum var. puberulum (Ranunculaceae) derived from CCS reads using the PacBio RS platform
por: Chen, Xiaochen, et al.
Publicado: (2015)

PaSS: a sequencing simulator for PacBio sequencing
por: Zhang, Wenmin, et al.
Publicado: (2019)

Highly-multiplexed and efficient long-amplicon PacBio and Nanopore sequencing of hundreds of full mitochondrial genomes
por: Karin, Benjamin R., et al.
Publicado: (2023)

A transcriptome atlas of rabbit revealed by PacBio single-molecule long-read sequencing
por: Chen, Shi-Yi, et al.
Publicado: (2017)

Organelle_PBA, a pipeline for assembling chloroplast and mitochondrial genomes from PacBio DNA sequencing data
por: Soorni, Aboozar, et al.
Publicado: (2017)

Comparison of structural variants detected by PacBio-CLR and ONT sequencing in pear
por: Liu, Yueyuan, et al.
Publicado: (2022)

High-throughput telomere length measurement at nucleotide resolution using the PacBio high fidelity sequencing platform
por: Tham, Cheng-Yong, et al.
Publicado: (2023)

High-throughput long paired-end sequencing of a Fosmid library by PacBio
por: Dai, Zhaozhao, et al.
Publicado: (2019)

Improving PacBio Long Read Accuracy by Short Read Alignment
por: Au, Kin Fai, et al.
Publicado: (2012)

A fault-tolerant method for HLA typing with PacBio data
por: Chang, Chia-Jung, et al.
Publicado: (2014)

The complete chloroplast genome of Camellia brevistyla (Hayata) Coh. St. (Theaceae: Ericales) from China based on PacBio and Illumina data
por: Yin, Xin, et al.
Publicado: (2021)

Analysis and comprehensive comparison of PacBio and nanopore-based RNA sequencing of the Arabidopsis transcriptome
por: Cui, Jiawen, et al.
Publicado: (2020)

Comprehensive transcriptome characterization of Grus japonensis using PacBio SMRT and Illumina sequencing
por: Ye, Wentao, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_k5alv1q4jvmfeq1ee3e3pba7s2