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Ensemble recurrent neural network with whale optimization algorithm-based DNA sequence classification for medical applications

The modern data-driven era has facilitated the gathering of large quantities of biomedical and clinical data. The deoxyribonucleic acid gene expression datasets have become a vital focus for the research community because of their capability to detect pathogens via ‘biomarkers’ or particular modific...

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Autor principal: Alshammari, Abdulaziz
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10231859/
https://www.ncbi.nlm.nih.gov/pubmed/37362270
http://dx.doi.org/10.1007/s00500-023-08435-y
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author Alshammari, Abdulaziz
author_facet Alshammari, Abdulaziz
author_sort Alshammari, Abdulaziz
collection PubMed
description The modern data-driven era has facilitated the gathering of large quantities of biomedical and clinical data. The deoxyribonucleic acid gene expression datasets have become a vital focus for the research community because of their capability to detect pathogens via ‘biomarkers’ or particular modifications in the gene sequence which portray a specific pathogen. Metaheuristic-related feature selection (FS) efficiently filters out only the pertinent genes out of large feature sets to lessen the data storage and computation requirements. This paper embraces the whale optimization algorithm for the FS issue in HD microarray data for the effectual propagation of candidate solutions to reach global optima over sufficient iterations. The chosen data are classified by employing an ensemble recurrent network (ERNN) that retains the amalgamation of long short-term memory, bidirectional long short-term memory, and gated recurrent units. Analysis of this proposed ERNN methodology would be performed by correlating with diverse advanced methodologies, and thus, the ERNN attains 99.59% precision and 99.59% accuracy.
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spelling pubmed-102318592023-06-01 Ensemble recurrent neural network with whale optimization algorithm-based DNA sequence classification for medical applications Alshammari, Abdulaziz Soft comput Focus The modern data-driven era has facilitated the gathering of large quantities of biomedical and clinical data. The deoxyribonucleic acid gene expression datasets have become a vital focus for the research community because of their capability to detect pathogens via ‘biomarkers’ or particular modifications in the gene sequence which portray a specific pathogen. Metaheuristic-related feature selection (FS) efficiently filters out only the pertinent genes out of large feature sets to lessen the data storage and computation requirements. This paper embraces the whale optimization algorithm for the FS issue in HD microarray data for the effectual propagation of candidate solutions to reach global optima over sufficient iterations. The chosen data are classified by employing an ensemble recurrent network (ERNN) that retains the amalgamation of long short-term memory, bidirectional long short-term memory, and gated recurrent units. Analysis of this proposed ERNN methodology would be performed by correlating with diverse advanced methodologies, and thus, the ERNN attains 99.59% precision and 99.59% accuracy. Springer Berlin Heidelberg 2023-05-31 /pmc/articles/PMC10231859/ /pubmed/37362270 http://dx.doi.org/10.1007/s00500-023-08435-y Text en © The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.
spellingShingle Focus
Alshammari, Abdulaziz
Ensemble recurrent neural network with whale optimization algorithm-based DNA sequence classification for medical applications
title Ensemble recurrent neural network with whale optimization algorithm-based DNA sequence classification for medical applications
title_full Ensemble recurrent neural network with whale optimization algorithm-based DNA sequence classification for medical applications
title_fullStr Ensemble recurrent neural network with whale optimization algorithm-based DNA sequence classification for medical applications
title_full_unstemmed Ensemble recurrent neural network with whale optimization algorithm-based DNA sequence classification for medical applications
title_short Ensemble recurrent neural network with whale optimization algorithm-based DNA sequence classification for medical applications
title_sort ensemble recurrent neural network with whale optimization algorithm-based dna sequence classification for medical applications
topic Focus
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10231859/
https://www.ncbi.nlm.nih.gov/pubmed/37362270
http://dx.doi.org/10.1007/s00500-023-08435-y
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