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Ensemble recurrent neural network with whale optimization algorithm-based DNA sequence classification for medical applications
The modern data-driven era has facilitated the gathering of large quantities of biomedical and clinical data. The deoxyribonucleic acid gene expression datasets have become a vital focus for the research community because of their capability to detect pathogens via ‘biomarkers’ or particular modific...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Springer Berlin Heidelberg
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10231859/ https://www.ncbi.nlm.nih.gov/pubmed/37362270 http://dx.doi.org/10.1007/s00500-023-08435-y |
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author | Alshammari, Abdulaziz |
author_facet | Alshammari, Abdulaziz |
author_sort | Alshammari, Abdulaziz |
collection | PubMed |
description | The modern data-driven era has facilitated the gathering of large quantities of biomedical and clinical data. The deoxyribonucleic acid gene expression datasets have become a vital focus for the research community because of their capability to detect pathogens via ‘biomarkers’ or particular modifications in the gene sequence which portray a specific pathogen. Metaheuristic-related feature selection (FS) efficiently filters out only the pertinent genes out of large feature sets to lessen the data storage and computation requirements. This paper embraces the whale optimization algorithm for the FS issue in HD microarray data for the effectual propagation of candidate solutions to reach global optima over sufficient iterations. The chosen data are classified by employing an ensemble recurrent network (ERNN) that retains the amalgamation of long short-term memory, bidirectional long short-term memory, and gated recurrent units. Analysis of this proposed ERNN methodology would be performed by correlating with diverse advanced methodologies, and thus, the ERNN attains 99.59% precision and 99.59% accuracy. |
format | Online Article Text |
id | pubmed-10231859 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-102318592023-06-01 Ensemble recurrent neural network with whale optimization algorithm-based DNA sequence classification for medical applications Alshammari, Abdulaziz Soft comput Focus The modern data-driven era has facilitated the gathering of large quantities of biomedical and clinical data. The deoxyribonucleic acid gene expression datasets have become a vital focus for the research community because of their capability to detect pathogens via ‘biomarkers’ or particular modifications in the gene sequence which portray a specific pathogen. Metaheuristic-related feature selection (FS) efficiently filters out only the pertinent genes out of large feature sets to lessen the data storage and computation requirements. This paper embraces the whale optimization algorithm for the FS issue in HD microarray data for the effectual propagation of candidate solutions to reach global optima over sufficient iterations. The chosen data are classified by employing an ensemble recurrent network (ERNN) that retains the amalgamation of long short-term memory, bidirectional long short-term memory, and gated recurrent units. Analysis of this proposed ERNN methodology would be performed by correlating with diverse advanced methodologies, and thus, the ERNN attains 99.59% precision and 99.59% accuracy. Springer Berlin Heidelberg 2023-05-31 /pmc/articles/PMC10231859/ /pubmed/37362270 http://dx.doi.org/10.1007/s00500-023-08435-y Text en © The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic. |
spellingShingle | Focus Alshammari, Abdulaziz Ensemble recurrent neural network with whale optimization algorithm-based DNA sequence classification for medical applications |
title | Ensemble recurrent neural network with whale optimization algorithm-based DNA sequence classification for medical applications |
title_full | Ensemble recurrent neural network with whale optimization algorithm-based DNA sequence classification for medical applications |
title_fullStr | Ensemble recurrent neural network with whale optimization algorithm-based DNA sequence classification for medical applications |
title_full_unstemmed | Ensemble recurrent neural network with whale optimization algorithm-based DNA sequence classification for medical applications |
title_short | Ensemble recurrent neural network with whale optimization algorithm-based DNA sequence classification for medical applications |
title_sort | ensemble recurrent neural network with whale optimization algorithm-based dna sequence classification for medical applications |
topic | Focus |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10231859/ https://www.ncbi.nlm.nih.gov/pubmed/37362270 http://dx.doi.org/10.1007/s00500-023-08435-y |
work_keys_str_mv | AT alshammariabdulaziz ensemblerecurrentneuralnetworkwithwhaleoptimizationalgorithmbaseddnasequenceclassificationformedicalapplications |