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Machine learning-aided atomic structure identification of interfacial ionic hydrates from AFM images

Relevant to broad applied fields and natural processes, interfacial ionic hydrates have been widely studied by using ultrahigh-resolution atomic force microscopy (AFM). However, the complex relationship between the AFM signal and the investigated system makes it difficult to determine the atomic str...

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Detalles Bibliográficos
Autores principales: Tang, Binze, Song, Yizhi, Qin, Mian, Tian, Ye, Wu, Zhen Wei, Jiang, Ying, Cao, Duanyun, Xu, Limei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10232042/
https://www.ncbi.nlm.nih.gov/pubmed/37266561
http://dx.doi.org/10.1093/nsr/nwac282
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author Tang, Binze
Song, Yizhi
Qin, Mian
Tian, Ye
Wu, Zhen Wei
Jiang, Ying
Cao, Duanyun
Xu, Limei
author_facet Tang, Binze
Song, Yizhi
Qin, Mian
Tian, Ye
Wu, Zhen Wei
Jiang, Ying
Cao, Duanyun
Xu, Limei
author_sort Tang, Binze
collection PubMed
description Relevant to broad applied fields and natural processes, interfacial ionic hydrates have been widely studied by using ultrahigh-resolution atomic force microscopy (AFM). However, the complex relationship between the AFM signal and the investigated system makes it difficult to determine the atomic structure of such a complex system from AFM images alone. Using machine learning, we achieved precise identification of the atomic structures of interfacial water/ionic hydrates based on AFM images, including the position of each atom and the orientations of water molecules. Furthermore, it was found that structure prediction of ionic hydrates can be achieved cost-effectively by transfer learning using neural network trained with easily available interfacial water data. Thus, this work provides an efficient and economical methodology that not only opens up avenues to determine atomic structures of more complex systems from AFM images, but may also help to interpret other scientific studies involving sophisticated experimental results.
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spelling pubmed-102320422023-06-01 Machine learning-aided atomic structure identification of interfacial ionic hydrates from AFM images Tang, Binze Song, Yizhi Qin, Mian Tian, Ye Wu, Zhen Wei Jiang, Ying Cao, Duanyun Xu, Limei Natl Sci Rev Research Article Relevant to broad applied fields and natural processes, interfacial ionic hydrates have been widely studied by using ultrahigh-resolution atomic force microscopy (AFM). However, the complex relationship between the AFM signal and the investigated system makes it difficult to determine the atomic structure of such a complex system from AFM images alone. Using machine learning, we achieved precise identification of the atomic structures of interfacial water/ionic hydrates based on AFM images, including the position of each atom and the orientations of water molecules. Furthermore, it was found that structure prediction of ionic hydrates can be achieved cost-effectively by transfer learning using neural network trained with easily available interfacial water data. Thus, this work provides an efficient and economical methodology that not only opens up avenues to determine atomic structures of more complex systems from AFM images, but may also help to interpret other scientific studies involving sophisticated experimental results. Oxford University Press 2022-12-14 /pmc/articles/PMC10232042/ /pubmed/37266561 http://dx.doi.org/10.1093/nsr/nwac282 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of China Science Publishing & Media Ltd. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Tang, Binze
Song, Yizhi
Qin, Mian
Tian, Ye
Wu, Zhen Wei
Jiang, Ying
Cao, Duanyun
Xu, Limei
Machine learning-aided atomic structure identification of interfacial ionic hydrates from AFM images
title Machine learning-aided atomic structure identification of interfacial ionic hydrates from AFM images
title_full Machine learning-aided atomic structure identification of interfacial ionic hydrates from AFM images
title_fullStr Machine learning-aided atomic structure identification of interfacial ionic hydrates from AFM images
title_full_unstemmed Machine learning-aided atomic structure identification of interfacial ionic hydrates from AFM images
title_short Machine learning-aided atomic structure identification of interfacial ionic hydrates from AFM images
title_sort machine learning-aided atomic structure identification of interfacial ionic hydrates from afm images
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10232042/
https://www.ncbi.nlm.nih.gov/pubmed/37266561
http://dx.doi.org/10.1093/nsr/nwac282
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