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Machine learning-aided atomic structure identification of interfacial ionic hydrates from AFM images
Relevant to broad applied fields and natural processes, interfacial ionic hydrates have been widely studied by using ultrahigh-resolution atomic force microscopy (AFM). However, the complex relationship between the AFM signal and the investigated system makes it difficult to determine the atomic str...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10232042/ https://www.ncbi.nlm.nih.gov/pubmed/37266561 http://dx.doi.org/10.1093/nsr/nwac282 |
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author | Tang, Binze Song, Yizhi Qin, Mian Tian, Ye Wu, Zhen Wei Jiang, Ying Cao, Duanyun Xu, Limei |
author_facet | Tang, Binze Song, Yizhi Qin, Mian Tian, Ye Wu, Zhen Wei Jiang, Ying Cao, Duanyun Xu, Limei |
author_sort | Tang, Binze |
collection | PubMed |
description | Relevant to broad applied fields and natural processes, interfacial ionic hydrates have been widely studied by using ultrahigh-resolution atomic force microscopy (AFM). However, the complex relationship between the AFM signal and the investigated system makes it difficult to determine the atomic structure of such a complex system from AFM images alone. Using machine learning, we achieved precise identification of the atomic structures of interfacial water/ionic hydrates based on AFM images, including the position of each atom and the orientations of water molecules. Furthermore, it was found that structure prediction of ionic hydrates can be achieved cost-effectively by transfer learning using neural network trained with easily available interfacial water data. Thus, this work provides an efficient and economical methodology that not only opens up avenues to determine atomic structures of more complex systems from AFM images, but may also help to interpret other scientific studies involving sophisticated experimental results. |
format | Online Article Text |
id | pubmed-10232042 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-102320422023-06-01 Machine learning-aided atomic structure identification of interfacial ionic hydrates from AFM images Tang, Binze Song, Yizhi Qin, Mian Tian, Ye Wu, Zhen Wei Jiang, Ying Cao, Duanyun Xu, Limei Natl Sci Rev Research Article Relevant to broad applied fields and natural processes, interfacial ionic hydrates have been widely studied by using ultrahigh-resolution atomic force microscopy (AFM). However, the complex relationship between the AFM signal and the investigated system makes it difficult to determine the atomic structure of such a complex system from AFM images alone. Using machine learning, we achieved precise identification of the atomic structures of interfacial water/ionic hydrates based on AFM images, including the position of each atom and the orientations of water molecules. Furthermore, it was found that structure prediction of ionic hydrates can be achieved cost-effectively by transfer learning using neural network trained with easily available interfacial water data. Thus, this work provides an efficient and economical methodology that not only opens up avenues to determine atomic structures of more complex systems from AFM images, but may also help to interpret other scientific studies involving sophisticated experimental results. Oxford University Press 2022-12-14 /pmc/articles/PMC10232042/ /pubmed/37266561 http://dx.doi.org/10.1093/nsr/nwac282 Text en © The Author(s) 2022. Published by Oxford University Press on behalf of China Science Publishing & Media Ltd. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Tang, Binze Song, Yizhi Qin, Mian Tian, Ye Wu, Zhen Wei Jiang, Ying Cao, Duanyun Xu, Limei Machine learning-aided atomic structure identification of interfacial ionic hydrates from AFM images |
title | Machine learning-aided atomic structure identification of interfacial ionic hydrates from AFM images |
title_full | Machine learning-aided atomic structure identification of interfacial ionic hydrates from AFM images |
title_fullStr | Machine learning-aided atomic structure identification of interfacial ionic hydrates from AFM images |
title_full_unstemmed | Machine learning-aided atomic structure identification of interfacial ionic hydrates from AFM images |
title_short | Machine learning-aided atomic structure identification of interfacial ionic hydrates from AFM images |
title_sort | machine learning-aided atomic structure identification of interfacial ionic hydrates from afm images |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10232042/ https://www.ncbi.nlm.nih.gov/pubmed/37266561 http://dx.doi.org/10.1093/nsr/nwac282 |
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