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Ensemble-based multi-tissue classification approach of colorectal cancer histology images using a novel hybrid deep learning framework

Colorectal cancer (CRC) is the second leading cause of cancer death in the world, so digital pathology is essential for assessing prognosis. Due to the increasing resolution and quantity of whole slide images (WSIs), as well as the lack of annotated information, previous methodologies cannot be gene...

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Autores principales: Khazaee Fadafen, Masoud, Rezaee, Khosro
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10232488/
https://www.ncbi.nlm.nih.gov/pubmed/37258631
http://dx.doi.org/10.1038/s41598-023-35431-x
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author Khazaee Fadafen, Masoud
Rezaee, Khosro
author_facet Khazaee Fadafen, Masoud
Rezaee, Khosro
author_sort Khazaee Fadafen, Masoud
collection PubMed
description Colorectal cancer (CRC) is the second leading cause of cancer death in the world, so digital pathology is essential for assessing prognosis. Due to the increasing resolution and quantity of whole slide images (WSIs), as well as the lack of annotated information, previous methodologies cannot be generalized as effective decision-making systems. Since deep learning (DL) methods can handle large-scale applications, they can provide a viable alternative to histopathology image (HI) analysis. DL architectures, however, may not be sufficient to classify CRC tissues based on anatomical histopathology data. A dilated ResNet (dResNet) structure and attention module are used to generate deep feature maps in order to classify multiple tissues in HIs. In addition, neighborhood component analysis (NCA) overcomes the constraint of computational complexity. Data is fed into a deep support vector machine (SVM) based on an ensemble learning algorithm called DeepSVM after the features have been selected. CRC-5000 and NCT-CRC-HE-100 K datasets were analyzed to validate and test the hybrid procedure. We demonstrate that the hybrid model achieves 98.75% and 99.76% accuracy on CRC datasets. The results showed that only pathologists' labels could successfully classify unseen WSIs. Furthermore, the hybrid deep learning method outperforms state-of-the-art approaches in terms of computational efficiency and time. Using the proposed mechanism for tissue analysis, it will be possible to correctly predict CRC based on accurate pathology image classification.
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spelling pubmed-102324882023-06-02 Ensemble-based multi-tissue classification approach of colorectal cancer histology images using a novel hybrid deep learning framework Khazaee Fadafen, Masoud Rezaee, Khosro Sci Rep Article Colorectal cancer (CRC) is the second leading cause of cancer death in the world, so digital pathology is essential for assessing prognosis. Due to the increasing resolution and quantity of whole slide images (WSIs), as well as the lack of annotated information, previous methodologies cannot be generalized as effective decision-making systems. Since deep learning (DL) methods can handle large-scale applications, they can provide a viable alternative to histopathology image (HI) analysis. DL architectures, however, may not be sufficient to classify CRC tissues based on anatomical histopathology data. A dilated ResNet (dResNet) structure and attention module are used to generate deep feature maps in order to classify multiple tissues in HIs. In addition, neighborhood component analysis (NCA) overcomes the constraint of computational complexity. Data is fed into a deep support vector machine (SVM) based on an ensemble learning algorithm called DeepSVM after the features have been selected. CRC-5000 and NCT-CRC-HE-100 K datasets were analyzed to validate and test the hybrid procedure. We demonstrate that the hybrid model achieves 98.75% and 99.76% accuracy on CRC datasets. The results showed that only pathologists' labels could successfully classify unseen WSIs. Furthermore, the hybrid deep learning method outperforms state-of-the-art approaches in terms of computational efficiency and time. Using the proposed mechanism for tissue analysis, it will be possible to correctly predict CRC based on accurate pathology image classification. Nature Publishing Group UK 2023-05-31 /pmc/articles/PMC10232488/ /pubmed/37258631 http://dx.doi.org/10.1038/s41598-023-35431-x Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Khazaee Fadafen, Masoud
Rezaee, Khosro
Ensemble-based multi-tissue classification approach of colorectal cancer histology images using a novel hybrid deep learning framework
title Ensemble-based multi-tissue classification approach of colorectal cancer histology images using a novel hybrid deep learning framework
title_full Ensemble-based multi-tissue classification approach of colorectal cancer histology images using a novel hybrid deep learning framework
title_fullStr Ensemble-based multi-tissue classification approach of colorectal cancer histology images using a novel hybrid deep learning framework
title_full_unstemmed Ensemble-based multi-tissue classification approach of colorectal cancer histology images using a novel hybrid deep learning framework
title_short Ensemble-based multi-tissue classification approach of colorectal cancer histology images using a novel hybrid deep learning framework
title_sort ensemble-based multi-tissue classification approach of colorectal cancer histology images using a novel hybrid deep learning framework
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10232488/
https://www.ncbi.nlm.nih.gov/pubmed/37258631
http://dx.doi.org/10.1038/s41598-023-35431-x
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