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(1)H, (15)N, (13)C backbone and Cβ resonance assignments for UBQLN1 UBA and UBAA domains

UBQLN1 functions in autophagy and proteasome-mediated protein degradation. It contains an N-terminal ubiquitin-like domain (UBL), a C-terminal ubiquitin-associated domain (UBA), and a flexible central region which functions as a chaperone to prevent protein aggregation. Here, we report the (1)H, (15...

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Autores principales: Buel, Gwen R., Chen, Xiang, Kayode, Olumide, Cruz, Anthony, Walters, Kylie J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Netherlands 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10232632/
https://www.ncbi.nlm.nih.gov/pubmed/37022617
http://dx.doi.org/10.1007/s12104-023-10127-5
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author Buel, Gwen R.
Chen, Xiang
Kayode, Olumide
Cruz, Anthony
Walters, Kylie J.
author_facet Buel, Gwen R.
Chen, Xiang
Kayode, Olumide
Cruz, Anthony
Walters, Kylie J.
author_sort Buel, Gwen R.
collection PubMed
description UBQLN1 functions in autophagy and proteasome-mediated protein degradation. It contains an N-terminal ubiquitin-like domain (UBL), a C-terminal ubiquitin-associated domain (UBA), and a flexible central region which functions as a chaperone to prevent protein aggregation. Here, we report the (1)H, (15)N, and (13)C resonance assignments for the backbone ((N)H, N, C’, Cα, and Hα) and sidechain Cβ atoms of the UBQLN1 UBA and an N-terminally adjacent segment called the UBA-adjacent domain (UBAA). We find a subset of the resonances corresponding to the UBAA to have concentration-dependent chemical shifts, likely due to self-association. We also find the backbone amide nitrogen of T572 to be shifted upfield relative to the average value for a threonine amide nitrogen, a phenomenon likely caused by T572 Hγ1 engagement in a hydrogen bond with adjacent backbone carbonyl atoms. The assignments described in this manuscript can be used to study the protein dynamics of the UBQLN1 UBA and UBAA as well as the interaction of these domains with other proteins.
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spelling pubmed-102326322023-06-02 (1)H, (15)N, (13)C backbone and Cβ resonance assignments for UBQLN1 UBA and UBAA domains Buel, Gwen R. Chen, Xiang Kayode, Olumide Cruz, Anthony Walters, Kylie J. Biomol NMR Assign Article UBQLN1 functions in autophagy and proteasome-mediated protein degradation. It contains an N-terminal ubiquitin-like domain (UBL), a C-terminal ubiquitin-associated domain (UBA), and a flexible central region which functions as a chaperone to prevent protein aggregation. Here, we report the (1)H, (15)N, and (13)C resonance assignments for the backbone ((N)H, N, C’, Cα, and Hα) and sidechain Cβ atoms of the UBQLN1 UBA and an N-terminally adjacent segment called the UBA-adjacent domain (UBAA). We find a subset of the resonances corresponding to the UBAA to have concentration-dependent chemical shifts, likely due to self-association. We also find the backbone amide nitrogen of T572 to be shifted upfield relative to the average value for a threonine amide nitrogen, a phenomenon likely caused by T572 Hγ1 engagement in a hydrogen bond with adjacent backbone carbonyl atoms. The assignments described in this manuscript can be used to study the protein dynamics of the UBQLN1 UBA and UBAA as well as the interaction of these domains with other proteins. Springer Netherlands 2023-04-06 2023 /pmc/articles/PMC10232632/ /pubmed/37022617 http://dx.doi.org/10.1007/s12104-023-10127-5 Text en © This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply 2023. Springer Nature or its licensor (e.g. a society or other partner) holds exclusive rights to this article under a publishing agreement with the author(s) or other rightsholder(s); author self-archiving of the accepted manuscript version of this article is solely governed by the terms of such publishing agreement and applicable law. https://creativecommons.org/licenses/by/4.0/Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Buel, Gwen R.
Chen, Xiang
Kayode, Olumide
Cruz, Anthony
Walters, Kylie J.
(1)H, (15)N, (13)C backbone and Cβ resonance assignments for UBQLN1 UBA and UBAA domains
title (1)H, (15)N, (13)C backbone and Cβ resonance assignments for UBQLN1 UBA and UBAA domains
title_full (1)H, (15)N, (13)C backbone and Cβ resonance assignments for UBQLN1 UBA and UBAA domains
title_fullStr (1)H, (15)N, (13)C backbone and Cβ resonance assignments for UBQLN1 UBA and UBAA domains
title_full_unstemmed (1)H, (15)N, (13)C backbone and Cβ resonance assignments for UBQLN1 UBA and UBAA domains
title_short (1)H, (15)N, (13)C backbone and Cβ resonance assignments for UBQLN1 UBA and UBAA domains
title_sort (1)h, (15)n, (13)c backbone and cβ resonance assignments for ubqln1 uba and ubaa domains
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10232632/
https://www.ncbi.nlm.nih.gov/pubmed/37022617
http://dx.doi.org/10.1007/s12104-023-10127-5
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