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Multiple sclerosis lesion segmentation: revisiting weighting mechanisms for federated learning

BACKGROUND AND INTRODUCTION: Federated learning (FL) has been widely employed for medical image analysis to facilitate multi-client collaborative learning without sharing raw data. Despite great success, FL's applications remain suboptimal in neuroimage analysis tasks such as lesion segmentatio...

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Autores principales: Liu, Dongnan, Cabezas, Mariano, Wang, Dongang, Tang, Zihao, Bai, Lei, Zhan, Geng, Luo, Yuling, Kyle, Kain, Ly, Linda, Yu, James, Shieh, Chun-Chien, Nguyen, Aria, Kandasamy Karuppiah, Ettikan, Sullivan, Ryan, Calamante, Fernando, Barnett, Michael, Ouyang, Wanli, Cai, Weidong, Wang, Chenyu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10232857/
https://www.ncbi.nlm.nih.gov/pubmed/37274196
http://dx.doi.org/10.3389/fnins.2023.1167612
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author Liu, Dongnan
Cabezas, Mariano
Wang, Dongang
Tang, Zihao
Bai, Lei
Zhan, Geng
Luo, Yuling
Kyle, Kain
Ly, Linda
Yu, James
Shieh, Chun-Chien
Nguyen, Aria
Kandasamy Karuppiah, Ettikan
Sullivan, Ryan
Calamante, Fernando
Barnett, Michael
Ouyang, Wanli
Cai, Weidong
Wang, Chenyu
author_facet Liu, Dongnan
Cabezas, Mariano
Wang, Dongang
Tang, Zihao
Bai, Lei
Zhan, Geng
Luo, Yuling
Kyle, Kain
Ly, Linda
Yu, James
Shieh, Chun-Chien
Nguyen, Aria
Kandasamy Karuppiah, Ettikan
Sullivan, Ryan
Calamante, Fernando
Barnett, Michael
Ouyang, Wanli
Cai, Weidong
Wang, Chenyu
author_sort Liu, Dongnan
collection PubMed
description BACKGROUND AND INTRODUCTION: Federated learning (FL) has been widely employed for medical image analysis to facilitate multi-client collaborative learning without sharing raw data. Despite great success, FL's applications remain suboptimal in neuroimage analysis tasks such as lesion segmentation in multiple sclerosis (MS), due to variance in lesion characteristics imparted by different scanners and acquisition parameters. METHODS: In this work, we propose the first FL MS lesion segmentation framework via two effective re-weighting mechanisms. Specifically, a learnable weight is assigned to each local node during the aggregation process, based on its segmentation performance. In addition, the segmentation loss function in each client is also re-weighted according to the lesion volume for the data during training. RESULTS: The proposed method has been validated on two FL MS segmentation scenarios using public and clinical datasets. Specifically, the case-wise and voxel-wise Dice score of the proposed method under the first public dataset is 65.20 and 74.30, respectively. On the second in-house dataset, the case-wise and voxel-wise Dice score is 53.66, and 62.31, respectively. DISCUSSIONS AND CONCLUSIONS: The Comparison experiments on two FL MS segmentation scenarios using public and clinical datasets have demonstrated the effectiveness of the proposed method by significantly outperforming other FL methods. Furthermore, the segmentation performance of FL incorporating our proposed aggregation mechanism can achieve comparable performance to that from centralized training with all the raw data.
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spelling pubmed-102328572023-06-02 Multiple sclerosis lesion segmentation: revisiting weighting mechanisms for federated learning Liu, Dongnan Cabezas, Mariano Wang, Dongang Tang, Zihao Bai, Lei Zhan, Geng Luo, Yuling Kyle, Kain Ly, Linda Yu, James Shieh, Chun-Chien Nguyen, Aria Kandasamy Karuppiah, Ettikan Sullivan, Ryan Calamante, Fernando Barnett, Michael Ouyang, Wanli Cai, Weidong Wang, Chenyu Front Neurosci Neuroscience BACKGROUND AND INTRODUCTION: Federated learning (FL) has been widely employed for medical image analysis to facilitate multi-client collaborative learning without sharing raw data. Despite great success, FL's applications remain suboptimal in neuroimage analysis tasks such as lesion segmentation in multiple sclerosis (MS), due to variance in lesion characteristics imparted by different scanners and acquisition parameters. METHODS: In this work, we propose the first FL MS lesion segmentation framework via two effective re-weighting mechanisms. Specifically, a learnable weight is assigned to each local node during the aggregation process, based on its segmentation performance. In addition, the segmentation loss function in each client is also re-weighted according to the lesion volume for the data during training. RESULTS: The proposed method has been validated on two FL MS segmentation scenarios using public and clinical datasets. Specifically, the case-wise and voxel-wise Dice score of the proposed method under the first public dataset is 65.20 and 74.30, respectively. On the second in-house dataset, the case-wise and voxel-wise Dice score is 53.66, and 62.31, respectively. DISCUSSIONS AND CONCLUSIONS: The Comparison experiments on two FL MS segmentation scenarios using public and clinical datasets have demonstrated the effectiveness of the proposed method by significantly outperforming other FL methods. Furthermore, the segmentation performance of FL incorporating our proposed aggregation mechanism can achieve comparable performance to that from centralized training with all the raw data. Frontiers Media S.A. 2023-05-18 /pmc/articles/PMC10232857/ /pubmed/37274196 http://dx.doi.org/10.3389/fnins.2023.1167612 Text en Copyright © 2023 Liu, Cabezas, Wang, Tang, Bai, Zhan, Luo, Kyle, Ly, Yu, Shieh, Nguyen, Kandasamy Karuppiah, Sullivan, Calamante, Barnett, Ouyang, Cai and Wang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Liu, Dongnan
Cabezas, Mariano
Wang, Dongang
Tang, Zihao
Bai, Lei
Zhan, Geng
Luo, Yuling
Kyle, Kain
Ly, Linda
Yu, James
Shieh, Chun-Chien
Nguyen, Aria
Kandasamy Karuppiah, Ettikan
Sullivan, Ryan
Calamante, Fernando
Barnett, Michael
Ouyang, Wanli
Cai, Weidong
Wang, Chenyu
Multiple sclerosis lesion segmentation: revisiting weighting mechanisms for federated learning
title Multiple sclerosis lesion segmentation: revisiting weighting mechanisms for federated learning
title_full Multiple sclerosis lesion segmentation: revisiting weighting mechanisms for federated learning
title_fullStr Multiple sclerosis lesion segmentation: revisiting weighting mechanisms for federated learning
title_full_unstemmed Multiple sclerosis lesion segmentation: revisiting weighting mechanisms for federated learning
title_short Multiple sclerosis lesion segmentation: revisiting weighting mechanisms for federated learning
title_sort multiple sclerosis lesion segmentation: revisiting weighting mechanisms for federated learning
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10232857/
https://www.ncbi.nlm.nih.gov/pubmed/37274196
http://dx.doi.org/10.3389/fnins.2023.1167612
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