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Multiple sclerosis lesion segmentation: revisiting weighting mechanisms for federated learning
BACKGROUND AND INTRODUCTION: Federated learning (FL) has been widely employed for medical image analysis to facilitate multi-client collaborative learning without sharing raw data. Despite great success, FL's applications remain suboptimal in neuroimage analysis tasks such as lesion segmentatio...
Autores principales: | , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Frontiers Media S.A.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10232857/ https://www.ncbi.nlm.nih.gov/pubmed/37274196 http://dx.doi.org/10.3389/fnins.2023.1167612 |
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author | Liu, Dongnan Cabezas, Mariano Wang, Dongang Tang, Zihao Bai, Lei Zhan, Geng Luo, Yuling Kyle, Kain Ly, Linda Yu, James Shieh, Chun-Chien Nguyen, Aria Kandasamy Karuppiah, Ettikan Sullivan, Ryan Calamante, Fernando Barnett, Michael Ouyang, Wanli Cai, Weidong Wang, Chenyu |
author_facet | Liu, Dongnan Cabezas, Mariano Wang, Dongang Tang, Zihao Bai, Lei Zhan, Geng Luo, Yuling Kyle, Kain Ly, Linda Yu, James Shieh, Chun-Chien Nguyen, Aria Kandasamy Karuppiah, Ettikan Sullivan, Ryan Calamante, Fernando Barnett, Michael Ouyang, Wanli Cai, Weidong Wang, Chenyu |
author_sort | Liu, Dongnan |
collection | PubMed |
description | BACKGROUND AND INTRODUCTION: Federated learning (FL) has been widely employed for medical image analysis to facilitate multi-client collaborative learning without sharing raw data. Despite great success, FL's applications remain suboptimal in neuroimage analysis tasks such as lesion segmentation in multiple sclerosis (MS), due to variance in lesion characteristics imparted by different scanners and acquisition parameters. METHODS: In this work, we propose the first FL MS lesion segmentation framework via two effective re-weighting mechanisms. Specifically, a learnable weight is assigned to each local node during the aggregation process, based on its segmentation performance. In addition, the segmentation loss function in each client is also re-weighted according to the lesion volume for the data during training. RESULTS: The proposed method has been validated on two FL MS segmentation scenarios using public and clinical datasets. Specifically, the case-wise and voxel-wise Dice score of the proposed method under the first public dataset is 65.20 and 74.30, respectively. On the second in-house dataset, the case-wise and voxel-wise Dice score is 53.66, and 62.31, respectively. DISCUSSIONS AND CONCLUSIONS: The Comparison experiments on two FL MS segmentation scenarios using public and clinical datasets have demonstrated the effectiveness of the proposed method by significantly outperforming other FL methods. Furthermore, the segmentation performance of FL incorporating our proposed aggregation mechanism can achieve comparable performance to that from centralized training with all the raw data. |
format | Online Article Text |
id | pubmed-10232857 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-102328572023-06-02 Multiple sclerosis lesion segmentation: revisiting weighting mechanisms for federated learning Liu, Dongnan Cabezas, Mariano Wang, Dongang Tang, Zihao Bai, Lei Zhan, Geng Luo, Yuling Kyle, Kain Ly, Linda Yu, James Shieh, Chun-Chien Nguyen, Aria Kandasamy Karuppiah, Ettikan Sullivan, Ryan Calamante, Fernando Barnett, Michael Ouyang, Wanli Cai, Weidong Wang, Chenyu Front Neurosci Neuroscience BACKGROUND AND INTRODUCTION: Federated learning (FL) has been widely employed for medical image analysis to facilitate multi-client collaborative learning without sharing raw data. Despite great success, FL's applications remain suboptimal in neuroimage analysis tasks such as lesion segmentation in multiple sclerosis (MS), due to variance in lesion characteristics imparted by different scanners and acquisition parameters. METHODS: In this work, we propose the first FL MS lesion segmentation framework via two effective re-weighting mechanisms. Specifically, a learnable weight is assigned to each local node during the aggregation process, based on its segmentation performance. In addition, the segmentation loss function in each client is also re-weighted according to the lesion volume for the data during training. RESULTS: The proposed method has been validated on two FL MS segmentation scenarios using public and clinical datasets. Specifically, the case-wise and voxel-wise Dice score of the proposed method under the first public dataset is 65.20 and 74.30, respectively. On the second in-house dataset, the case-wise and voxel-wise Dice score is 53.66, and 62.31, respectively. DISCUSSIONS AND CONCLUSIONS: The Comparison experiments on two FL MS segmentation scenarios using public and clinical datasets have demonstrated the effectiveness of the proposed method by significantly outperforming other FL methods. Furthermore, the segmentation performance of FL incorporating our proposed aggregation mechanism can achieve comparable performance to that from centralized training with all the raw data. Frontiers Media S.A. 2023-05-18 /pmc/articles/PMC10232857/ /pubmed/37274196 http://dx.doi.org/10.3389/fnins.2023.1167612 Text en Copyright © 2023 Liu, Cabezas, Wang, Tang, Bai, Zhan, Luo, Kyle, Ly, Yu, Shieh, Nguyen, Kandasamy Karuppiah, Sullivan, Calamante, Barnett, Ouyang, Cai and Wang. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Neuroscience Liu, Dongnan Cabezas, Mariano Wang, Dongang Tang, Zihao Bai, Lei Zhan, Geng Luo, Yuling Kyle, Kain Ly, Linda Yu, James Shieh, Chun-Chien Nguyen, Aria Kandasamy Karuppiah, Ettikan Sullivan, Ryan Calamante, Fernando Barnett, Michael Ouyang, Wanli Cai, Weidong Wang, Chenyu Multiple sclerosis lesion segmentation: revisiting weighting mechanisms for federated learning |
title | Multiple sclerosis lesion segmentation: revisiting weighting mechanisms for federated learning |
title_full | Multiple sclerosis lesion segmentation: revisiting weighting mechanisms for federated learning |
title_fullStr | Multiple sclerosis lesion segmentation: revisiting weighting mechanisms for federated learning |
title_full_unstemmed | Multiple sclerosis lesion segmentation: revisiting weighting mechanisms for federated learning |
title_short | Multiple sclerosis lesion segmentation: revisiting weighting mechanisms for federated learning |
title_sort | multiple sclerosis lesion segmentation: revisiting weighting mechanisms for federated learning |
topic | Neuroscience |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10232857/ https://www.ncbi.nlm.nih.gov/pubmed/37274196 http://dx.doi.org/10.3389/fnins.2023.1167612 |
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