Cargando…

Breed identification using breed-informative SNPs and machine learning based on whole genome sequence data and SNP chip data

BACKGROUND: Breed identification is useful in a variety of biological contexts. Breed identification usually involves two stages, i.e., detection of breed-informative SNPs and breed assignment. For both stages, there are several methods proposed. However, what is the optimal combination of these met...

Descripción completa

Detalles Bibliográficos
Autores principales:	Zhao, Changheng, Wang, Dan, Teng, Jun, Yang, Cheng, Zhang, Xinyi, Wei, Xianming, Zhang, Qin
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2023
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10234014/ https://www.ncbi.nlm.nih.gov/pubmed/37259083 http://dx.doi.org/10.1186/s40104-023-00880-x

Ejemplares similares

Efficient SNP Discovery by Combining Microarray and Lab-on-a-Chip Data for Animal Breeding and Selection
por: Huang, Chao-Wei, et al.
Publicado: (2015)

Genetic diversity and breed-informative SNPs identification in domestic pig populations using coding SNPs
por: Hayah, Ichrak, et al.
Publicado: (2023)

Estimation of inbreeding using pedigree, 50k SNP chip genotypes and full sequence data in three cattle breeds
por: Zhang, Qianqian, et al.
Publicado: (2015)

Admixture and breed traceability in European indigenous pig breeds and wild boar using genome-wide SNP data
por: Dadousis, Christos, et al.
Publicado: (2022)

The climatic and genetic heritage of Italian goat breeds with genomic SNP data
por: Cortellari, Matteo, et al.
Publicado: (2021)

Tracing Cattle Breeds with Principal Components Analysis Ancestry Informative SNPs
por: Lewis, Jamey, et al.
Publicado: (2011)

Genetic diversity of Italian goat breeds assessed with a medium-density SNP chip
por: Nicoloso, Letizia, et al.
Publicado: (2015)

The genetic heritage of Alpine local cattle breeds using genomic SNP data
por: Senczuk, Gabriele, et al.
Publicado: (2020)

Genetic diversity of a New Zealand multi-breed sheep population and composite breeds’ history revealed by a high-density SNP chip
por: Brito, Luiz F., et al.
Publicado: (2017)

Simultaneous QTL detection and genomic breeding value estimation using high density SNP chips
por: Veerkamp, Roel F, et al.
Publicado: (2010)

SNP Markers and Their Impact on Plant Breeding
por: Mammadov, Jafar, et al.
Publicado: (2012)

Whole-genome sequence, SNP chips and pedigree structure: building demographic profiles in domestic dog breeds to optimize genetic-trait mapping
por: Dreger, Dayna L., et al.
Publicado: (2016)

Light whole genome sequence for SNP discovery across domestic cat breeds
por: Mullikin, James C, et al.
Publicado: (2010)

Prediction of genomic breeding values for growth, carcass and meat quality traits in a multi-breed sheep population using a HD SNP chip
por: Brito, Luiz F., et al.
Publicado: (2017)

Evaluation of Single Nucleotide Polymorphisms (SNPs) Genotyped by the Illumina Bovine SNP50K in Cattle Focusing on Hanwoo Breed
por: Dadi, Hailu, et al.
Publicado: (2012)

Author Correction: The climatic and genetic heritage of Italian goat breeds with genomic SNP data
por: Cortellari, Matteo, et al.
Publicado: (2021)

Assessment of the Genetic Diversity of a Local Pig Breed Using Pedigree and SNP Data
por: Krupa, Emil, et al.
Publicado: (2021)

Discovering candidate SNPs for resilience breeding of red clover
por: Osterman, Johanna, et al.
Publicado: (2022)

Single-copy gene based 50 K SNP chip for genetic studies and molecular breeding in rice
por: Singh, Nisha, et al.
Publicado: (2015)

Genomic Prediction of Breeding Values Using a Subset of SNPs Identified by Three Machine Learning Methods
por: Li, Bo, et al.
Publicado: (2018)

Whole-genome SNP association analysis of reproduction traits in the Finnish Landrace pig breed
por: Uimari, Pekka, et al.
Publicado: (2011)

Insights into the Genetic History of French Cattle from Dense SNP Data on 47 Worldwide Breeds
por: Gautier, Mathieu, et al.
Publicado: (2010)

The Origin of a Coastal Indigenous Horse Breed in China Revealed by Genome-Wide SNP Data
por: Ma, Hongying, et al.
Publicado: (2019)

Genetic Diversity and Signatures of Selection in a Native Italian Horse Breed Based on SNP Data
por: Ablondi, Michela, et al.
Publicado: (2020)

Screening Discriminating SNPs for Chinese Indigenous Pig Breeds Identification Using a Random Forests Algorithm
por: Gao, Jun, et al.
Publicado: (2022)

Identification of breed-specific genomic variants in Colombian Creole pig breeds by whole-genome sequencing
por: Suárez-Mesa, Rafael, et al.
Publicado: (2023)

SNPs for Parentage Testing and Traceability in Globally Diverse Breeds of Sheep
por: Heaton, Michael P., et al.
Publicado: (2014)

Utility of whole-genome sequence data for across-breed genomic prediction
por: Raymond, Biaty, et al.
Publicado: (2018)

Data of whole-genome sequencing of Karakul, Zel, and Kermani sheep breeds
por: Saadatabadi, Leila Mohammadipour, et al.
Publicado: (2023)

An assessment of population structure in eight breeds of cattle using a whole genome SNP panel
por: McKay, Stephanie D, et al.
Publicado: (2008)

Identification and Association of SNPs in TBC1D1 Gene with Growth Traits in Two Rabbit Breeds
por: Yang, Zhi-Juan, et al.
Publicado: (2013)

Development of high-resolution multiple-SNP arrays for genetic analyses and molecular breeding through genotyping by target sequencing and liquid chip
por: Guo, Zifeng, et al.
Publicado: (2021)

BreedingEIS: An Efficient Evaluation Information System for Crop Breeding
por: Qi, Kaijie, et al.
Publicado: (2023)

Identification of Functional SNPs in BARD1 Gene and In Silico Analysis of Damaging SNPs: Based on Data Procured from dbSNP Database
por: Alshatwi, Ali A., et al.
Publicado: (2012)

Identification of Genome-Wide Copy Number Variations among Diverse Pig Breeds Using SNP Genotyping Arrays
por: Wang, Jiying, et al.
Publicado: (2013)

Genome-Wide SNPs and InDels Characteristics of Three Chinese Cattle Breeds
por: Zhang, Fengwei, et al.
Publicado: (2019)

Correction: Insights into the Genetic History of French Cattle from Dense SNP Data on 47 Worldwide Breeds
por: Gautier, Mathieu, et al.
Publicado: (2011)

Correction: Insights into the Genetic History of French Cattle from Dense SNP Data on 47 Worldwide Breeds
por: Gautier, Mathieu, et al.
Publicado: (2011)

MethylToSNP: identifying SNPs in Illumina DNA methylation array data
por: LaBarre, Brenna A., et al.
Publicado: (2019)

The importance of information on relatives for the prediction of genomic breeding values and the implications for the makeup of reference data sets in livestock breeding schemes
por: Clark, Samuel A, et al.
Publicado: (2012)

Cannot write session to /tmp/vufind_sessions/sess_ov3ocda642i5uubpc3utb5tk9p