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Comparative genomics of Stutzerimonas balearica (Pseudomonas balearica): diversity, habitats, and biodegradation of aromatic compounds
Stutzerimonas balearica (Pseudomonas balearica) has been found principally in oil-polluted environments. The capability of S. balearica to thrive from the degradation of pollutant compounds makes it a species of interest for potential bioremediation applications. However, little has been reported ab...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Media S.A.
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10234333/ https://www.ncbi.nlm.nih.gov/pubmed/37275147 http://dx.doi.org/10.3389/fmicb.2023.1159176 |
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author | Salvà-Serra, Francisco Pérez-Pantoja, Danilo Donoso, Raúl A. Jaén-Luchoro, Daniel Fernández-Juárez, Víctor Engström-Jakobsson, Hedvig Moore, Edward R. B. Lalucat, Jorge Bennasar-Figueras, Antoni |
author_facet | Salvà-Serra, Francisco Pérez-Pantoja, Danilo Donoso, Raúl A. Jaén-Luchoro, Daniel Fernández-Juárez, Víctor Engström-Jakobsson, Hedvig Moore, Edward R. B. Lalucat, Jorge Bennasar-Figueras, Antoni |
author_sort | Salvà-Serra, Francisco |
collection | PubMed |
description | Stutzerimonas balearica (Pseudomonas balearica) has been found principally in oil-polluted environments. The capability of S. balearica to thrive from the degradation of pollutant compounds makes it a species of interest for potential bioremediation applications. However, little has been reported about the diversity of S. balearica. In this study, genome sequences of S. balearica strains from different origins were analyzed, revealing that it is a diverse species with an open pan-genome that will continue revealing new genes and functionalities as the genomes of more strains are sequenced. The nucleotide signatures and intra- and inter-species variation of the 16S rRNA genes of S. balearica were reevaluated. A strategy of screening 16S rRNA gene sequences in public databases enabled the detection of 158 additional strains, of which only 23% were described as S. balearica. The species was detected from a wide range of environments, although mostly from aquatic and polluted environments, predominantly related to petroleum oil. Genomic and phenotypic analyses confirmed that S. balearica possesses varied inherent capabilities for aromatic compounds degradation. This study increases the knowledge of the biology and diversity of S. balearica and will serve as a basis for future work with the species. |
format | Online Article Text |
id | pubmed-10234333 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Frontiers Media S.A. |
record_format | MEDLINE/PubMed |
spelling | pubmed-102343332023-06-02 Comparative genomics of Stutzerimonas balearica (Pseudomonas balearica): diversity, habitats, and biodegradation of aromatic compounds Salvà-Serra, Francisco Pérez-Pantoja, Danilo Donoso, Raúl A. Jaén-Luchoro, Daniel Fernández-Juárez, Víctor Engström-Jakobsson, Hedvig Moore, Edward R. B. Lalucat, Jorge Bennasar-Figueras, Antoni Front Microbiol Microbiology Stutzerimonas balearica (Pseudomonas balearica) has been found principally in oil-polluted environments. The capability of S. balearica to thrive from the degradation of pollutant compounds makes it a species of interest for potential bioremediation applications. However, little has been reported about the diversity of S. balearica. In this study, genome sequences of S. balearica strains from different origins were analyzed, revealing that it is a diverse species with an open pan-genome that will continue revealing new genes and functionalities as the genomes of more strains are sequenced. The nucleotide signatures and intra- and inter-species variation of the 16S rRNA genes of S. balearica were reevaluated. A strategy of screening 16S rRNA gene sequences in public databases enabled the detection of 158 additional strains, of which only 23% were described as S. balearica. The species was detected from a wide range of environments, although mostly from aquatic and polluted environments, predominantly related to petroleum oil. Genomic and phenotypic analyses confirmed that S. balearica possesses varied inherent capabilities for aromatic compounds degradation. This study increases the knowledge of the biology and diversity of S. balearica and will serve as a basis for future work with the species. Frontiers Media S.A. 2023-05-15 /pmc/articles/PMC10234333/ /pubmed/37275147 http://dx.doi.org/10.3389/fmicb.2023.1159176 Text en Copyright © 2023 Salvà-Serra, Pérez-Pantoja, Donoso, Jaén-Luchoro, Fernández-Juárez, Engström-Jakobsson, Moore, Lalucat and Bennasar-Figueras. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. |
spellingShingle | Microbiology Salvà-Serra, Francisco Pérez-Pantoja, Danilo Donoso, Raúl A. Jaén-Luchoro, Daniel Fernández-Juárez, Víctor Engström-Jakobsson, Hedvig Moore, Edward R. B. Lalucat, Jorge Bennasar-Figueras, Antoni Comparative genomics of Stutzerimonas balearica (Pseudomonas balearica): diversity, habitats, and biodegradation of aromatic compounds |
title | Comparative genomics of Stutzerimonas balearica (Pseudomonas balearica): diversity, habitats, and biodegradation of aromatic compounds |
title_full | Comparative genomics of Stutzerimonas balearica (Pseudomonas balearica): diversity, habitats, and biodegradation of aromatic compounds |
title_fullStr | Comparative genomics of Stutzerimonas balearica (Pseudomonas balearica): diversity, habitats, and biodegradation of aromatic compounds |
title_full_unstemmed | Comparative genomics of Stutzerimonas balearica (Pseudomonas balearica): diversity, habitats, and biodegradation of aromatic compounds |
title_short | Comparative genomics of Stutzerimonas balearica (Pseudomonas balearica): diversity, habitats, and biodegradation of aromatic compounds |
title_sort | comparative genomics of stutzerimonas balearica (pseudomonas balearica): diversity, habitats, and biodegradation of aromatic compounds |
topic | Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10234333/ https://www.ncbi.nlm.nih.gov/pubmed/37275147 http://dx.doi.org/10.3389/fmicb.2023.1159176 |
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