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Comparative genomics of Stutzerimonas balearica (Pseudomonas balearica): diversity, habitats, and biodegradation of aromatic compounds

Stutzerimonas balearica (Pseudomonas balearica) has been found principally in oil-polluted environments. The capability of S. balearica to thrive from the degradation of pollutant compounds makes it a species of interest for potential bioremediation applications. However, little has been reported ab...

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Autores principales: Salvà-Serra, Francisco, Pérez-Pantoja, Danilo, Donoso, Raúl A., Jaén-Luchoro, Daniel, Fernández-Juárez, Víctor, Engström-Jakobsson, Hedvig, Moore, Edward R. B., Lalucat, Jorge, Bennasar-Figueras, Antoni
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10234333/
https://www.ncbi.nlm.nih.gov/pubmed/37275147
http://dx.doi.org/10.3389/fmicb.2023.1159176
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author Salvà-Serra, Francisco
Pérez-Pantoja, Danilo
Donoso, Raúl A.
Jaén-Luchoro, Daniel
Fernández-Juárez, Víctor
Engström-Jakobsson, Hedvig
Moore, Edward R. B.
Lalucat, Jorge
Bennasar-Figueras, Antoni
author_facet Salvà-Serra, Francisco
Pérez-Pantoja, Danilo
Donoso, Raúl A.
Jaén-Luchoro, Daniel
Fernández-Juárez, Víctor
Engström-Jakobsson, Hedvig
Moore, Edward R. B.
Lalucat, Jorge
Bennasar-Figueras, Antoni
author_sort Salvà-Serra, Francisco
collection PubMed
description Stutzerimonas balearica (Pseudomonas balearica) has been found principally in oil-polluted environments. The capability of S. balearica to thrive from the degradation of pollutant compounds makes it a species of interest for potential bioremediation applications. However, little has been reported about the diversity of S. balearica. In this study, genome sequences of S. balearica strains from different origins were analyzed, revealing that it is a diverse species with an open pan-genome that will continue revealing new genes and functionalities as the genomes of more strains are sequenced. The nucleotide signatures and intra- and inter-species variation of the 16S rRNA genes of S. balearica were reevaluated. A strategy of screening 16S rRNA gene sequences in public databases enabled the detection of 158 additional strains, of which only 23% were described as S. balearica. The species was detected from a wide range of environments, although mostly from aquatic and polluted environments, predominantly related to petroleum oil. Genomic and phenotypic analyses confirmed that S. balearica possesses varied inherent capabilities for aromatic compounds degradation. This study increases the knowledge of the biology and diversity of S. balearica and will serve as a basis for future work with the species.
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spelling pubmed-102343332023-06-02 Comparative genomics of Stutzerimonas balearica (Pseudomonas balearica): diversity, habitats, and biodegradation of aromatic compounds Salvà-Serra, Francisco Pérez-Pantoja, Danilo Donoso, Raúl A. Jaén-Luchoro, Daniel Fernández-Juárez, Víctor Engström-Jakobsson, Hedvig Moore, Edward R. B. Lalucat, Jorge Bennasar-Figueras, Antoni Front Microbiol Microbiology Stutzerimonas balearica (Pseudomonas balearica) has been found principally in oil-polluted environments. The capability of S. balearica to thrive from the degradation of pollutant compounds makes it a species of interest for potential bioremediation applications. However, little has been reported about the diversity of S. balearica. In this study, genome sequences of S. balearica strains from different origins were analyzed, revealing that it is a diverse species with an open pan-genome that will continue revealing new genes and functionalities as the genomes of more strains are sequenced. The nucleotide signatures and intra- and inter-species variation of the 16S rRNA genes of S. balearica were reevaluated. A strategy of screening 16S rRNA gene sequences in public databases enabled the detection of 158 additional strains, of which only 23% were described as S. balearica. The species was detected from a wide range of environments, although mostly from aquatic and polluted environments, predominantly related to petroleum oil. Genomic and phenotypic analyses confirmed that S. balearica possesses varied inherent capabilities for aromatic compounds degradation. This study increases the knowledge of the biology and diversity of S. balearica and will serve as a basis for future work with the species. Frontiers Media S.A. 2023-05-15 /pmc/articles/PMC10234333/ /pubmed/37275147 http://dx.doi.org/10.3389/fmicb.2023.1159176 Text en Copyright © 2023 Salvà-Serra, Pérez-Pantoja, Donoso, Jaén-Luchoro, Fernández-Juárez, Engström-Jakobsson, Moore, Lalucat and Bennasar-Figueras. https://creativecommons.org/licenses/by/4.0/This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Salvà-Serra, Francisco
Pérez-Pantoja, Danilo
Donoso, Raúl A.
Jaén-Luchoro, Daniel
Fernández-Juárez, Víctor
Engström-Jakobsson, Hedvig
Moore, Edward R. B.
Lalucat, Jorge
Bennasar-Figueras, Antoni
Comparative genomics of Stutzerimonas balearica (Pseudomonas balearica): diversity, habitats, and biodegradation of aromatic compounds
title Comparative genomics of Stutzerimonas balearica (Pseudomonas balearica): diversity, habitats, and biodegradation of aromatic compounds
title_full Comparative genomics of Stutzerimonas balearica (Pseudomonas balearica): diversity, habitats, and biodegradation of aromatic compounds
title_fullStr Comparative genomics of Stutzerimonas balearica (Pseudomonas balearica): diversity, habitats, and biodegradation of aromatic compounds
title_full_unstemmed Comparative genomics of Stutzerimonas balearica (Pseudomonas balearica): diversity, habitats, and biodegradation of aromatic compounds
title_short Comparative genomics of Stutzerimonas balearica (Pseudomonas balearica): diversity, habitats, and biodegradation of aromatic compounds
title_sort comparative genomics of stutzerimonas balearica (pseudomonas balearica): diversity, habitats, and biodegradation of aromatic compounds
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10234333/
https://www.ncbi.nlm.nih.gov/pubmed/37275147
http://dx.doi.org/10.3389/fmicb.2023.1159176
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