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Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems

The Tara Pacific expedition (2016–2018) sampled coral ecosystems around 32 islands in the Pacific Ocean and the ocean surface waters at 249 locations, resulting in the collection of nearly 58 000 samples. The expedition was designed to systematically study warm-water coral reefs and included the col...

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Autores principales: Lombard, Fabien, Bourdin, Guillaume, Pesant, Stéphane, Agostini, Sylvain, Baudena, Alberto, Boissin, Emilie, Cassar, Nicolas, Clampitt, Megan, Conan, Pascal, Da Silva, Ophélie, Dimier, Céline, Douville, Eric, Elineau, Amanda, Fin, Jonathan, Flores, J. Michel, Ghiglione, Jean-François, Hume, Benjamin C. C., Jalabert, Laetitia, John, Seth G., Kelly, Rachel L., Koren, Ilan, Lin, Yajuan, Marie, Dominique, McMinds, Ryan, Mériguet, Zoé, Metzl, Nicolas, Paz-García, David A., Pedrotti, Maria Luiza, Poulain, Julie, Pujo-Pay, Mireille, Ras, Joséphine, Reverdin, Gilles, Romac, Sarah, Rouan, Alice, Röttinger, Eric, Vardi, Assaf, Voolstra, Christian R., Moulin, Clémentine, Iwankow, Guillaume, Banaigs, Bernard, Bowler, Chris, de Vargas, Colomban, Forcioli, Didier, Furla, Paola, Galand, Pierre E., Gilson, Eric, Reynaud, Stéphanie, Sunagawa, Shinichi, Sullivan, Matthew B., Thomas, Olivier P., Troublé, Romain, Thurber, Rebecca Vega, Wincker, Patrick, Zoccola, Didier, Allemand, Denis, Planes, Serge, Boss, Emmanuel, Gorsky, Gaby
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10235096/
https://www.ncbi.nlm.nih.gov/pubmed/37264023
http://dx.doi.org/10.1038/s41597-022-01757-w
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author Lombard, Fabien
Bourdin, Guillaume
Pesant, Stéphane
Agostini, Sylvain
Baudena, Alberto
Boissin, Emilie
Cassar, Nicolas
Clampitt, Megan
Conan, Pascal
Da Silva, Ophélie
Dimier, Céline
Douville, Eric
Elineau, Amanda
Fin, Jonathan
Flores, J. Michel
Ghiglione, Jean-François
Hume, Benjamin C. C.
Jalabert, Laetitia
John, Seth G.
Kelly, Rachel L.
Koren, Ilan
Lin, Yajuan
Marie, Dominique
McMinds, Ryan
Mériguet, Zoé
Metzl, Nicolas
Paz-García, David A.
Pedrotti, Maria Luiza
Poulain, Julie
Pujo-Pay, Mireille
Ras, Joséphine
Reverdin, Gilles
Romac, Sarah
Rouan, Alice
Röttinger, Eric
Vardi, Assaf
Voolstra, Christian R.
Moulin, Clémentine
Iwankow, Guillaume
Banaigs, Bernard
Bowler, Chris
de Vargas, Colomban
Forcioli, Didier
Furla, Paola
Galand, Pierre E.
Gilson, Eric
Reynaud, Stéphanie
Sunagawa, Shinichi
Sullivan, Matthew B.
Thomas, Olivier P.
Troublé, Romain
Thurber, Rebecca Vega
Wincker, Patrick
Zoccola, Didier
Allemand, Denis
Planes, Serge
Boss, Emmanuel
Gorsky, Gaby
author_facet Lombard, Fabien
Bourdin, Guillaume
Pesant, Stéphane
Agostini, Sylvain
Baudena, Alberto
Boissin, Emilie
Cassar, Nicolas
Clampitt, Megan
Conan, Pascal
Da Silva, Ophélie
Dimier, Céline
Douville, Eric
Elineau, Amanda
Fin, Jonathan
Flores, J. Michel
Ghiglione, Jean-François
Hume, Benjamin C. C.
Jalabert, Laetitia
John, Seth G.
Kelly, Rachel L.
Koren, Ilan
Lin, Yajuan
Marie, Dominique
McMinds, Ryan
Mériguet, Zoé
Metzl, Nicolas
Paz-García, David A.
Pedrotti, Maria Luiza
Poulain, Julie
Pujo-Pay, Mireille
Ras, Joséphine
Reverdin, Gilles
Romac, Sarah
Rouan, Alice
Röttinger, Eric
Vardi, Assaf
Voolstra, Christian R.
Moulin, Clémentine
Iwankow, Guillaume
Banaigs, Bernard
Bowler, Chris
de Vargas, Colomban
Forcioli, Didier
Furla, Paola
Galand, Pierre E.
Gilson, Eric
Reynaud, Stéphanie
Sunagawa, Shinichi
Sullivan, Matthew B.
Thomas, Olivier P.
Troublé, Romain
Thurber, Rebecca Vega
Wincker, Patrick
Zoccola, Didier
Allemand, Denis
Planes, Serge
Boss, Emmanuel
Gorsky, Gaby
author_sort Lombard, Fabien
collection PubMed
description The Tara Pacific expedition (2016–2018) sampled coral ecosystems around 32 islands in the Pacific Ocean and the ocean surface waters at 249 locations, resulting in the collection of nearly 58 000 samples. The expedition was designed to systematically study warm-water coral reefs and included the collection of corals, fish, plankton, and seawater samples for advanced biogeochemical, molecular, and imaging analysis. Here we provide a complete description of the sampling methodology, and we explain how to explore and access the different datasets generated by the expedition. Environmental context data were obtained from taxonomic registries, gazetteers, almanacs, climatologies, operational biogeochemical models, and satellite observations. The quality of the different environmental measures has been validated not only by various quality control steps, but also through a global analysis allowing the comparison with known environmental large-scale structures. Such publicly released datasets open the perspective to address a wide range of scientific questions.
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spelling pubmed-102350962023-06-03 Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems Lombard, Fabien Bourdin, Guillaume Pesant, Stéphane Agostini, Sylvain Baudena, Alberto Boissin, Emilie Cassar, Nicolas Clampitt, Megan Conan, Pascal Da Silva, Ophélie Dimier, Céline Douville, Eric Elineau, Amanda Fin, Jonathan Flores, J. Michel Ghiglione, Jean-François Hume, Benjamin C. C. Jalabert, Laetitia John, Seth G. Kelly, Rachel L. Koren, Ilan Lin, Yajuan Marie, Dominique McMinds, Ryan Mériguet, Zoé Metzl, Nicolas Paz-García, David A. Pedrotti, Maria Luiza Poulain, Julie Pujo-Pay, Mireille Ras, Joséphine Reverdin, Gilles Romac, Sarah Rouan, Alice Röttinger, Eric Vardi, Assaf Voolstra, Christian R. Moulin, Clémentine Iwankow, Guillaume Banaigs, Bernard Bowler, Chris de Vargas, Colomban Forcioli, Didier Furla, Paola Galand, Pierre E. Gilson, Eric Reynaud, Stéphanie Sunagawa, Shinichi Sullivan, Matthew B. Thomas, Olivier P. Troublé, Romain Thurber, Rebecca Vega Wincker, Patrick Zoccola, Didier Allemand, Denis Planes, Serge Boss, Emmanuel Gorsky, Gaby Sci Data Data Descriptor The Tara Pacific expedition (2016–2018) sampled coral ecosystems around 32 islands in the Pacific Ocean and the ocean surface waters at 249 locations, resulting in the collection of nearly 58 000 samples. The expedition was designed to systematically study warm-water coral reefs and included the collection of corals, fish, plankton, and seawater samples for advanced biogeochemical, molecular, and imaging analysis. Here we provide a complete description of the sampling methodology, and we explain how to explore and access the different datasets generated by the expedition. Environmental context data were obtained from taxonomic registries, gazetteers, almanacs, climatologies, operational biogeochemical models, and satellite observations. The quality of the different environmental measures has been validated not only by various quality control steps, but also through a global analysis allowing the comparison with known environmental large-scale structures. Such publicly released datasets open the perspective to address a wide range of scientific questions. Nature Publishing Group UK 2023-06-01 /pmc/articles/PMC10235096/ /pubmed/37264023 http://dx.doi.org/10.1038/s41597-022-01757-w Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Data Descriptor
Lombard, Fabien
Bourdin, Guillaume
Pesant, Stéphane
Agostini, Sylvain
Baudena, Alberto
Boissin, Emilie
Cassar, Nicolas
Clampitt, Megan
Conan, Pascal
Da Silva, Ophélie
Dimier, Céline
Douville, Eric
Elineau, Amanda
Fin, Jonathan
Flores, J. Michel
Ghiglione, Jean-François
Hume, Benjamin C. C.
Jalabert, Laetitia
John, Seth G.
Kelly, Rachel L.
Koren, Ilan
Lin, Yajuan
Marie, Dominique
McMinds, Ryan
Mériguet, Zoé
Metzl, Nicolas
Paz-García, David A.
Pedrotti, Maria Luiza
Poulain, Julie
Pujo-Pay, Mireille
Ras, Joséphine
Reverdin, Gilles
Romac, Sarah
Rouan, Alice
Röttinger, Eric
Vardi, Assaf
Voolstra, Christian R.
Moulin, Clémentine
Iwankow, Guillaume
Banaigs, Bernard
Bowler, Chris
de Vargas, Colomban
Forcioli, Didier
Furla, Paola
Galand, Pierre E.
Gilson, Eric
Reynaud, Stéphanie
Sunagawa, Shinichi
Sullivan, Matthew B.
Thomas, Olivier P.
Troublé, Romain
Thurber, Rebecca Vega
Wincker, Patrick
Zoccola, Didier
Allemand, Denis
Planes, Serge
Boss, Emmanuel
Gorsky, Gaby
Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems
title Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems
title_full Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems
title_fullStr Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems
title_full_unstemmed Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems
title_short Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems
title_sort open science resources from the tara pacific expedition across coral reef and surface ocean ecosystems
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10235096/
https://www.ncbi.nlm.nih.gov/pubmed/37264023
http://dx.doi.org/10.1038/s41597-022-01757-w
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