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Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems
The Tara Pacific expedition (2016–2018) sampled coral ecosystems around 32 islands in the Pacific Ocean and the ocean surface waters at 249 locations, resulting in the collection of nearly 58 000 samples. The expedition was designed to systematically study warm-water coral reefs and included the col...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10235096/ https://www.ncbi.nlm.nih.gov/pubmed/37264023 http://dx.doi.org/10.1038/s41597-022-01757-w |
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author | Lombard, Fabien Bourdin, Guillaume Pesant, Stéphane Agostini, Sylvain Baudena, Alberto Boissin, Emilie Cassar, Nicolas Clampitt, Megan Conan, Pascal Da Silva, Ophélie Dimier, Céline Douville, Eric Elineau, Amanda Fin, Jonathan Flores, J. Michel Ghiglione, Jean-François Hume, Benjamin C. C. Jalabert, Laetitia John, Seth G. Kelly, Rachel L. Koren, Ilan Lin, Yajuan Marie, Dominique McMinds, Ryan Mériguet, Zoé Metzl, Nicolas Paz-García, David A. Pedrotti, Maria Luiza Poulain, Julie Pujo-Pay, Mireille Ras, Joséphine Reverdin, Gilles Romac, Sarah Rouan, Alice Röttinger, Eric Vardi, Assaf Voolstra, Christian R. Moulin, Clémentine Iwankow, Guillaume Banaigs, Bernard Bowler, Chris de Vargas, Colomban Forcioli, Didier Furla, Paola Galand, Pierre E. Gilson, Eric Reynaud, Stéphanie Sunagawa, Shinichi Sullivan, Matthew B. Thomas, Olivier P. Troublé, Romain Thurber, Rebecca Vega Wincker, Patrick Zoccola, Didier Allemand, Denis Planes, Serge Boss, Emmanuel Gorsky, Gaby |
author_facet | Lombard, Fabien Bourdin, Guillaume Pesant, Stéphane Agostini, Sylvain Baudena, Alberto Boissin, Emilie Cassar, Nicolas Clampitt, Megan Conan, Pascal Da Silva, Ophélie Dimier, Céline Douville, Eric Elineau, Amanda Fin, Jonathan Flores, J. Michel Ghiglione, Jean-François Hume, Benjamin C. C. Jalabert, Laetitia John, Seth G. Kelly, Rachel L. Koren, Ilan Lin, Yajuan Marie, Dominique McMinds, Ryan Mériguet, Zoé Metzl, Nicolas Paz-García, David A. Pedrotti, Maria Luiza Poulain, Julie Pujo-Pay, Mireille Ras, Joséphine Reverdin, Gilles Romac, Sarah Rouan, Alice Röttinger, Eric Vardi, Assaf Voolstra, Christian R. Moulin, Clémentine Iwankow, Guillaume Banaigs, Bernard Bowler, Chris de Vargas, Colomban Forcioli, Didier Furla, Paola Galand, Pierre E. Gilson, Eric Reynaud, Stéphanie Sunagawa, Shinichi Sullivan, Matthew B. Thomas, Olivier P. Troublé, Romain Thurber, Rebecca Vega Wincker, Patrick Zoccola, Didier Allemand, Denis Planes, Serge Boss, Emmanuel Gorsky, Gaby |
author_sort | Lombard, Fabien |
collection | PubMed |
description | The Tara Pacific expedition (2016–2018) sampled coral ecosystems around 32 islands in the Pacific Ocean and the ocean surface waters at 249 locations, resulting in the collection of nearly 58 000 samples. The expedition was designed to systematically study warm-water coral reefs and included the collection of corals, fish, plankton, and seawater samples for advanced biogeochemical, molecular, and imaging analysis. Here we provide a complete description of the sampling methodology, and we explain how to explore and access the different datasets generated by the expedition. Environmental context data were obtained from taxonomic registries, gazetteers, almanacs, climatologies, operational biogeochemical models, and satellite observations. The quality of the different environmental measures has been validated not only by various quality control steps, but also through a global analysis allowing the comparison with known environmental large-scale structures. Such publicly released datasets open the perspective to address a wide range of scientific questions. |
format | Online Article Text |
id | pubmed-10235096 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-102350962023-06-03 Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems Lombard, Fabien Bourdin, Guillaume Pesant, Stéphane Agostini, Sylvain Baudena, Alberto Boissin, Emilie Cassar, Nicolas Clampitt, Megan Conan, Pascal Da Silva, Ophélie Dimier, Céline Douville, Eric Elineau, Amanda Fin, Jonathan Flores, J. Michel Ghiglione, Jean-François Hume, Benjamin C. C. Jalabert, Laetitia John, Seth G. Kelly, Rachel L. Koren, Ilan Lin, Yajuan Marie, Dominique McMinds, Ryan Mériguet, Zoé Metzl, Nicolas Paz-García, David A. Pedrotti, Maria Luiza Poulain, Julie Pujo-Pay, Mireille Ras, Joséphine Reverdin, Gilles Romac, Sarah Rouan, Alice Röttinger, Eric Vardi, Assaf Voolstra, Christian R. Moulin, Clémentine Iwankow, Guillaume Banaigs, Bernard Bowler, Chris de Vargas, Colomban Forcioli, Didier Furla, Paola Galand, Pierre E. Gilson, Eric Reynaud, Stéphanie Sunagawa, Shinichi Sullivan, Matthew B. Thomas, Olivier P. Troublé, Romain Thurber, Rebecca Vega Wincker, Patrick Zoccola, Didier Allemand, Denis Planes, Serge Boss, Emmanuel Gorsky, Gaby Sci Data Data Descriptor The Tara Pacific expedition (2016–2018) sampled coral ecosystems around 32 islands in the Pacific Ocean and the ocean surface waters at 249 locations, resulting in the collection of nearly 58 000 samples. The expedition was designed to systematically study warm-water coral reefs and included the collection of corals, fish, plankton, and seawater samples for advanced biogeochemical, molecular, and imaging analysis. Here we provide a complete description of the sampling methodology, and we explain how to explore and access the different datasets generated by the expedition. Environmental context data were obtained from taxonomic registries, gazetteers, almanacs, climatologies, operational biogeochemical models, and satellite observations. The quality of the different environmental measures has been validated not only by various quality control steps, but also through a global analysis allowing the comparison with known environmental large-scale structures. Such publicly released datasets open the perspective to address a wide range of scientific questions. Nature Publishing Group UK 2023-06-01 /pmc/articles/PMC10235096/ /pubmed/37264023 http://dx.doi.org/10.1038/s41597-022-01757-w Text en © The Author(s) 2022 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Data Descriptor Lombard, Fabien Bourdin, Guillaume Pesant, Stéphane Agostini, Sylvain Baudena, Alberto Boissin, Emilie Cassar, Nicolas Clampitt, Megan Conan, Pascal Da Silva, Ophélie Dimier, Céline Douville, Eric Elineau, Amanda Fin, Jonathan Flores, J. Michel Ghiglione, Jean-François Hume, Benjamin C. C. Jalabert, Laetitia John, Seth G. Kelly, Rachel L. Koren, Ilan Lin, Yajuan Marie, Dominique McMinds, Ryan Mériguet, Zoé Metzl, Nicolas Paz-García, David A. Pedrotti, Maria Luiza Poulain, Julie Pujo-Pay, Mireille Ras, Joséphine Reverdin, Gilles Romac, Sarah Rouan, Alice Röttinger, Eric Vardi, Assaf Voolstra, Christian R. Moulin, Clémentine Iwankow, Guillaume Banaigs, Bernard Bowler, Chris de Vargas, Colomban Forcioli, Didier Furla, Paola Galand, Pierre E. Gilson, Eric Reynaud, Stéphanie Sunagawa, Shinichi Sullivan, Matthew B. Thomas, Olivier P. Troublé, Romain Thurber, Rebecca Vega Wincker, Patrick Zoccola, Didier Allemand, Denis Planes, Serge Boss, Emmanuel Gorsky, Gaby Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems |
title | Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems |
title_full | Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems |
title_fullStr | Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems |
title_full_unstemmed | Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems |
title_short | Open science resources from the Tara Pacific expedition across coral reef and surface ocean ecosystems |
title_sort | open science resources from the tara pacific expedition across coral reef and surface ocean ecosystems |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10235096/ https://www.ncbi.nlm.nih.gov/pubmed/37264023 http://dx.doi.org/10.1038/s41597-022-01757-w |
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