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Comparative transcriptomic analysis of transcription factors and hormones during flower bud differentiation in ‘Red Globe’ grape under red‒blue light

Grape is a globally significant fruit-bearing crop, and the grape flower bud differentiation essential to fruit production is closely related to light quality. To investigate the regulatory mechanism of grape flower bud differentiation under red‒blue light, the transcriptome and hormone content were...

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Autores principales: Liu, Xin, Yuan, Miao, Dang, Shizhuo, Zhou, Juan, Zhang, Yahong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10235105/
https://www.ncbi.nlm.nih.gov/pubmed/37264033
http://dx.doi.org/10.1038/s41598-023-29402-5
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author Liu, Xin
Yuan, Miao
Dang, Shizhuo
Zhou, Juan
Zhang, Yahong
author_facet Liu, Xin
Yuan, Miao
Dang, Shizhuo
Zhou, Juan
Zhang, Yahong
author_sort Liu, Xin
collection PubMed
description Grape is a globally significant fruit-bearing crop, and the grape flower bud differentiation essential to fruit production is closely related to light quality. To investigate the regulatory mechanism of grape flower bud differentiation under red‒blue light, the transcriptome and hormone content were determined at four stages of flower bud differentiation. The levels of indole-3-acetic acid (IAA) and abscisic acid (ABA) in grape flower buds at all stages of differentiation under red‒blue light were higher than those in the control. However, the levels of cytokinins (CKs) and gibberellic acid (giberellins, GAs) fluctuated continuously over the course of flower bud differentiation. Moreover, many differentially expressed genes were involved in auxin, CK, GA, and the ABA signal transduction pathways. There were significant differences in the AUX/IAA, SAUR, A-RR, and ABF gene expression levels between the red‒blue light treatment and the control buds, especially in regard to the ABF genes, the expression levels of which were completely different between the two groups. The expression of GBF4 and AI5L2 in the control was always low, while the expression under red‒blue light increased. AI5L7 and AI5L5 expression levels showed an upwards trend in the control plant buds and gradually decreased in red‒blue light treatment plant buds. Through weighted gene coexpression network analysis, we determined that the transcription factors WRK48 (WRKY family), EF110 (ERF family), ABR1, CAMTA3 (CAMTA family), and HSFA3 (HSF family) may be involved in the regulation of the GBF4 gene. This study lays a foundation for further analysis of grape flower bud differentiation regulation under red‒blue light.
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spelling pubmed-102351052023-06-03 Comparative transcriptomic analysis of transcription factors and hormones during flower bud differentiation in ‘Red Globe’ grape under red‒blue light Liu, Xin Yuan, Miao Dang, Shizhuo Zhou, Juan Zhang, Yahong Sci Rep Article Grape is a globally significant fruit-bearing crop, and the grape flower bud differentiation essential to fruit production is closely related to light quality. To investigate the regulatory mechanism of grape flower bud differentiation under red‒blue light, the transcriptome and hormone content were determined at four stages of flower bud differentiation. The levels of indole-3-acetic acid (IAA) and abscisic acid (ABA) in grape flower buds at all stages of differentiation under red‒blue light were higher than those in the control. However, the levels of cytokinins (CKs) and gibberellic acid (giberellins, GAs) fluctuated continuously over the course of flower bud differentiation. Moreover, many differentially expressed genes were involved in auxin, CK, GA, and the ABA signal transduction pathways. There were significant differences in the AUX/IAA, SAUR, A-RR, and ABF gene expression levels between the red‒blue light treatment and the control buds, especially in regard to the ABF genes, the expression levels of which were completely different between the two groups. The expression of GBF4 and AI5L2 in the control was always low, while the expression under red‒blue light increased. AI5L7 and AI5L5 expression levels showed an upwards trend in the control plant buds and gradually decreased in red‒blue light treatment plant buds. Through weighted gene coexpression network analysis, we determined that the transcription factors WRK48 (WRKY family), EF110 (ERF family), ABR1, CAMTA3 (CAMTA family), and HSFA3 (HSF family) may be involved in the regulation of the GBF4 gene. This study lays a foundation for further analysis of grape flower bud differentiation regulation under red‒blue light. Nature Publishing Group UK 2023-06-01 /pmc/articles/PMC10235105/ /pubmed/37264033 http://dx.doi.org/10.1038/s41598-023-29402-5 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Liu, Xin
Yuan, Miao
Dang, Shizhuo
Zhou, Juan
Zhang, Yahong
Comparative transcriptomic analysis of transcription factors and hormones during flower bud differentiation in ‘Red Globe’ grape under red‒blue light
title Comparative transcriptomic analysis of transcription factors and hormones during flower bud differentiation in ‘Red Globe’ grape under red‒blue light
title_full Comparative transcriptomic analysis of transcription factors and hormones during flower bud differentiation in ‘Red Globe’ grape under red‒blue light
title_fullStr Comparative transcriptomic analysis of transcription factors and hormones during flower bud differentiation in ‘Red Globe’ grape under red‒blue light
title_full_unstemmed Comparative transcriptomic analysis of transcription factors and hormones during flower bud differentiation in ‘Red Globe’ grape under red‒blue light
title_short Comparative transcriptomic analysis of transcription factors and hormones during flower bud differentiation in ‘Red Globe’ grape under red‒blue light
title_sort comparative transcriptomic analysis of transcription factors and hormones during flower bud differentiation in ‘red globe’ grape under red‒blue light
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10235105/
https://www.ncbi.nlm.nih.gov/pubmed/37264033
http://dx.doi.org/10.1038/s41598-023-29402-5
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