Unlocking the Potential of Genomic Data to Inform Typhoid Fever Control Policy: Supportive Resources for Genomic Data Generation, Analysis, and Visualization

The global response to the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic demonstrated the value of timely and open sharing of genomic data with standardized metadata to facilitate monitoring of the emergence and spread of new variants. Here, we make the case for the value of...

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Autores principales: Carey, Megan E, Dyson, Zoe A, Argimón, Silvia, Cerdeira, Louise, Yeats, Corin, Aanensen, David, Mboowa, Gerald, Baker, Stephen, Tessema, Sofonias K, Smith, Anthony M, Okeke, Iruka N, Holt, Kathryn E
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Charting the Course Supplement
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10236510/
https://www.ncbi.nlm.nih.gov/pubmed/37274533
http://dx.doi.org/10.1093/ofid/ofad044
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author Carey, Megan E
Dyson, Zoe A
Argimón, Silvia
Cerdeira, Louise
Yeats, Corin
Aanensen, David
Mboowa, Gerald
Baker, Stephen
Tessema, Sofonias K
Smith, Anthony M
Okeke, Iruka N
Holt, Kathryn E
author_facet Carey, Megan E
Dyson, Zoe A
Argimón, Silvia
Cerdeira, Louise
Yeats, Corin
Aanensen, David
Mboowa, Gerald
Baker, Stephen
Tessema, Sofonias K
Smith, Anthony M
Okeke, Iruka N
Holt, Kathryn E
author_sort Carey, Megan E
collection PubMed
description The global response to the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic demonstrated the value of timely and open sharing of genomic data with standardized metadata to facilitate monitoring of the emergence and spread of new variants. Here, we make the case for the value of Salmonella Typhi (S. Typhi) genomic data and demonstrate the utility of freely available platforms and services that support the generation, analysis, and visualization of S. Typhi genomic data on the African continent and more broadly by introducing the Africa Centres for Disease Control and Prevention's Pathogen Genomics Initiative, SEQAFRICA, Typhi Pathogenwatch, TyphiNET, and the Global Typhoid Genomics Consortium.
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spelling pubmed-102365102023-06-03 Unlocking the Potential of Genomic Data to Inform Typhoid Fever Control Policy: Supportive Resources for Genomic Data Generation, Analysis, and Visualization Carey, Megan E Dyson, Zoe A Argimón, Silvia Cerdeira, Louise Yeats, Corin Aanensen, David Mboowa, Gerald Baker, Stephen Tessema, Sofonias K Smith, Anthony M Okeke, Iruka N Holt, Kathryn E Open Forum Infect Dis Charting the Course Supplement The global response to the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) pandemic demonstrated the value of timely and open sharing of genomic data with standardized metadata to facilitate monitoring of the emergence and spread of new variants. Here, we make the case for the value of Salmonella Typhi (S. Typhi) genomic data and demonstrate the utility of freely available platforms and services that support the generation, analysis, and visualization of S. Typhi genomic data on the African continent and more broadly by introducing the Africa Centres for Disease Control and Prevention's Pathogen Genomics Initiative, SEQAFRICA, Typhi Pathogenwatch, TyphiNET, and the Global Typhoid Genomics Consortium. Oxford University Press 2023-06-02 /pmc/articles/PMC10236510/ /pubmed/37274533 http://dx.doi.org/10.1093/ofid/ofad044 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of Infectious Diseases Society of America. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Charting the Course Supplement
Carey, Megan E
Dyson, Zoe A
Argimón, Silvia
Cerdeira, Louise
Yeats, Corin
Aanensen, David
Mboowa, Gerald
Baker, Stephen
Tessema, Sofonias K
Smith, Anthony M
Okeke, Iruka N
Holt, Kathryn E
Unlocking the Potential of Genomic Data to Inform Typhoid Fever Control Policy: Supportive Resources for Genomic Data Generation, Analysis, and Visualization
title Unlocking the Potential of Genomic Data to Inform Typhoid Fever Control Policy: Supportive Resources for Genomic Data Generation, Analysis, and Visualization
title_full Unlocking the Potential of Genomic Data to Inform Typhoid Fever Control Policy: Supportive Resources for Genomic Data Generation, Analysis, and Visualization
title_fullStr Unlocking the Potential of Genomic Data to Inform Typhoid Fever Control Policy: Supportive Resources for Genomic Data Generation, Analysis, and Visualization
title_full_unstemmed Unlocking the Potential of Genomic Data to Inform Typhoid Fever Control Policy: Supportive Resources for Genomic Data Generation, Analysis, and Visualization
title_short Unlocking the Potential of Genomic Data to Inform Typhoid Fever Control Policy: Supportive Resources for Genomic Data Generation, Analysis, and Visualization
title_sort unlocking the potential of genomic data to inform typhoid fever control policy: supportive resources for genomic data generation, analysis, and visualization
topic Charting the Course Supplement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10236510/
https://www.ncbi.nlm.nih.gov/pubmed/37274533
http://dx.doi.org/10.1093/ofid/ofad044
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