Cargando…

Clinical Value of Metagenomic Next-Generation Sequencing Using Spinal Tissue in the Rapid Diagnosis of Spinal Tuberculosis

PURPOSE: To evaluate the accuracy of metagenomic next-generation sequencing (mNGS) for rapid diagnosis of spinal tuberculosis using spinal tissue specimens. METHODS: Medical data regarding suspected spinal tuberculosis were retrospectively analyzed. The sensitivity, specificity, positive predictive...

Descripción completa

Detalles Bibliográficos
Autores principales: Jin, Yanghui, Hu, Shengping, Feng, Junkai, Ni, Jianjun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Dove 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10237199/
https://www.ncbi.nlm.nih.gov/pubmed/37274359
http://dx.doi.org/10.2147/IDR.S410914
_version_ 1785053108834926592
author Jin, Yanghui
Hu, Shengping
Feng, Junkai
Ni, Jianjun
author_facet Jin, Yanghui
Hu, Shengping
Feng, Junkai
Ni, Jianjun
author_sort Jin, Yanghui
collection PubMed
description PURPOSE: To evaluate the accuracy of metagenomic next-generation sequencing (mNGS) for rapid diagnosis of spinal tuberculosis using spinal tissue specimens. METHODS: Medical data regarding suspected spinal tuberculosis were retrospectively analyzed. The sensitivity, specificity, positive predictive value (PPV), negative predictive value (NPV), and area under the curve (AUC) of mNGS were calculated to determine its diagnostic efficacy, and these values were compared with culture and composite reference standard (CRS). RESULTS: Two hundred and three cases of spinal tuberculosis were included for analysis. The sensitivity, specificity, PPV, NPV, and AUC of mNGS compared with culture were all very good. When CRS was used for the comparison, the sensitivity of mNGS and culture were 71.2% and 73.0%; the specificity and PPV were 100% in all cases; the NPV were 74.2% and 75.4%; the AUCs were all 0.86. The sensitivity and NPV of culture were slightly higher than that of mNGS; however, the diagnostic efficacy of mNGS and culture was consistent (P > 0.05). CONCLUSION: Spinal tissue specimens for mNGS testing had very good accuracy for diagnosing spinal tuberculosis.
format Online
Article
Text
id pubmed-10237199
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Dove
record_format MEDLINE/PubMed
spelling pubmed-102371992023-06-03 Clinical Value of Metagenomic Next-Generation Sequencing Using Spinal Tissue in the Rapid Diagnosis of Spinal Tuberculosis Jin, Yanghui Hu, Shengping Feng, Junkai Ni, Jianjun Infect Drug Resist Original Research PURPOSE: To evaluate the accuracy of metagenomic next-generation sequencing (mNGS) for rapid diagnosis of spinal tuberculosis using spinal tissue specimens. METHODS: Medical data regarding suspected spinal tuberculosis were retrospectively analyzed. The sensitivity, specificity, positive predictive value (PPV), negative predictive value (NPV), and area under the curve (AUC) of mNGS were calculated to determine its diagnostic efficacy, and these values were compared with culture and composite reference standard (CRS). RESULTS: Two hundred and three cases of spinal tuberculosis were included for analysis. The sensitivity, specificity, PPV, NPV, and AUC of mNGS compared with culture were all very good. When CRS was used for the comparison, the sensitivity of mNGS and culture were 71.2% and 73.0%; the specificity and PPV were 100% in all cases; the NPV were 74.2% and 75.4%; the AUCs were all 0.86. The sensitivity and NPV of culture were slightly higher than that of mNGS; however, the diagnostic efficacy of mNGS and culture was consistent (P > 0.05). CONCLUSION: Spinal tissue specimens for mNGS testing had very good accuracy for diagnosing spinal tuberculosis. Dove 2023-05-29 /pmc/articles/PMC10237199/ /pubmed/37274359 http://dx.doi.org/10.2147/IDR.S410914 Text en © 2023 Jin et al. https://creativecommons.org/licenses/by-nc/3.0/This work is published and licensed by Dove Medical Press Limited. The full terms of this license are available at https://www.dovepress.com/terms.php and incorporate the Creative Commons Attribution – Non Commercial (unported, v3.0) License (http://creativecommons.org/licenses/by-nc/3.0/ (https://creativecommons.org/licenses/by-nc/3.0/) ). By accessing the work you hereby accept the Terms. Non-commercial uses of the work are permitted without any further permission from Dove Medical Press Limited, provided the work is properly attributed. For permission for commercial use of this work, please see paragraphs 4.2 and 5 of our Terms (https://www.dovepress.com/terms.php).
spellingShingle Original Research
Jin, Yanghui
Hu, Shengping
Feng, Junkai
Ni, Jianjun
Clinical Value of Metagenomic Next-Generation Sequencing Using Spinal Tissue in the Rapid Diagnosis of Spinal Tuberculosis
title Clinical Value of Metagenomic Next-Generation Sequencing Using Spinal Tissue in the Rapid Diagnosis of Spinal Tuberculosis
title_full Clinical Value of Metagenomic Next-Generation Sequencing Using Spinal Tissue in the Rapid Diagnosis of Spinal Tuberculosis
title_fullStr Clinical Value of Metagenomic Next-Generation Sequencing Using Spinal Tissue in the Rapid Diagnosis of Spinal Tuberculosis
title_full_unstemmed Clinical Value of Metagenomic Next-Generation Sequencing Using Spinal Tissue in the Rapid Diagnosis of Spinal Tuberculosis
title_short Clinical Value of Metagenomic Next-Generation Sequencing Using Spinal Tissue in the Rapid Diagnosis of Spinal Tuberculosis
title_sort clinical value of metagenomic next-generation sequencing using spinal tissue in the rapid diagnosis of spinal tuberculosis
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10237199/
https://www.ncbi.nlm.nih.gov/pubmed/37274359
http://dx.doi.org/10.2147/IDR.S410914
work_keys_str_mv AT jinyanghui clinicalvalueofmetagenomicnextgenerationsequencingusingspinaltissueintherapiddiagnosisofspinaltuberculosis
AT hushengping clinicalvalueofmetagenomicnextgenerationsequencingusingspinaltissueintherapiddiagnosisofspinaltuberculosis
AT fengjunkai clinicalvalueofmetagenomicnextgenerationsequencingusingspinaltissueintherapiddiagnosisofspinaltuberculosis
AT nijianjun clinicalvalueofmetagenomicnextgenerationsequencingusingspinaltissueintherapiddiagnosisofspinaltuberculosis