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Genome analysis of biosurfactant producing bacterium, Bacillus tequilensis
Bioremediation is crucial for recuperating polluted water and soil. By expanding the surface area of substrates, biosurfactants play a vital role in bioremediation. Biosurfactant-producing microbes release certain biosurfactant compounds, which are promoted for oil spill remediation. In the present...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Public Library of Science
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10237388/ https://www.ncbi.nlm.nih.gov/pubmed/37267268 http://dx.doi.org/10.1371/journal.pone.0285994 |
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author | Nayarisseri, Anuraj Singh, Sanjeev Kumar |
author_facet | Nayarisseri, Anuraj Singh, Sanjeev Kumar |
author_sort | Nayarisseri, Anuraj |
collection | PubMed |
description | Bioremediation is crucial for recuperating polluted water and soil. By expanding the surface area of substrates, biosurfactants play a vital role in bioremediation. Biosurfactant-producing microbes release certain biosurfactant compounds, which are promoted for oil spill remediation. In the present investigation, a biosurfactant-producing bacterium Bacillus tequilensis was isolated from Chilika Lake, Odisha, India (latitude and longitude: 19.8450 N 85.4788 E). Whole-Genome Sequencing (WGS) of Bacillus tequilensis was carried out using Illumina NextSeq 500. The size of the whole genome of Bacillus tequilensis was 4.47 MB consisting of 4,478,749 base pairs forming a circular chromosome with 528 scaffolds, 4492 protein-encoding genes (ORFs), 81 tRNA genes, and 114 ribosomal RNA transcription units. The total raw reads were 4209415, and the processed reads were 4058238 with 4492 genes. The whole genome obtained from the present investigation was used for genome annotation, variant calling, variant annotation, and comparative genome analysis with other existing Bacillus species. In this study, a pathway was constructed which describes the biosurfactant metabolism of Bacillus tequilensis. The study identified that genes such as SrfAD, SrfAC, SrfAA and SrfAB are involved in biosurfactant synthesis. The sequence of the genes SrfAD, SrfAC, SrfAA, SrfAB was deposited in GenBank database with accession MUG02427.1, MUG02428.1, MUG02429.1, MUG03515.1 respectively. The whole genome sequence was submitted to GenBank with an accession RMVO00000000 and the raw fastq reads were submitted to SRA, NCBI repository with an accession: SRX5023292. |
format | Online Article Text |
id | pubmed-10237388 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-102373882023-06-03 Genome analysis of biosurfactant producing bacterium, Bacillus tequilensis Nayarisseri, Anuraj Singh, Sanjeev Kumar PLoS One Research Article Bioremediation is crucial for recuperating polluted water and soil. By expanding the surface area of substrates, biosurfactants play a vital role in bioremediation. Biosurfactant-producing microbes release certain biosurfactant compounds, which are promoted for oil spill remediation. In the present investigation, a biosurfactant-producing bacterium Bacillus tequilensis was isolated from Chilika Lake, Odisha, India (latitude and longitude: 19.8450 N 85.4788 E). Whole-Genome Sequencing (WGS) of Bacillus tequilensis was carried out using Illumina NextSeq 500. The size of the whole genome of Bacillus tequilensis was 4.47 MB consisting of 4,478,749 base pairs forming a circular chromosome with 528 scaffolds, 4492 protein-encoding genes (ORFs), 81 tRNA genes, and 114 ribosomal RNA transcription units. The total raw reads were 4209415, and the processed reads were 4058238 with 4492 genes. The whole genome obtained from the present investigation was used for genome annotation, variant calling, variant annotation, and comparative genome analysis with other existing Bacillus species. In this study, a pathway was constructed which describes the biosurfactant metabolism of Bacillus tequilensis. The study identified that genes such as SrfAD, SrfAC, SrfAA and SrfAB are involved in biosurfactant synthesis. The sequence of the genes SrfAD, SrfAC, SrfAA, SrfAB was deposited in GenBank database with accession MUG02427.1, MUG02428.1, MUG02429.1, MUG03515.1 respectively. The whole genome sequence was submitted to GenBank with an accession RMVO00000000 and the raw fastq reads were submitted to SRA, NCBI repository with an accession: SRX5023292. Public Library of Science 2023-06-02 /pmc/articles/PMC10237388/ /pubmed/37267268 http://dx.doi.org/10.1371/journal.pone.0285994 Text en © 2023 Nayarisseri, Singh https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Nayarisseri, Anuraj Singh, Sanjeev Kumar Genome analysis of biosurfactant producing bacterium, Bacillus tequilensis |
title | Genome analysis of biosurfactant producing bacterium, Bacillus tequilensis |
title_full | Genome analysis of biosurfactant producing bacterium, Bacillus tequilensis |
title_fullStr | Genome analysis of biosurfactant producing bacterium, Bacillus tequilensis |
title_full_unstemmed | Genome analysis of biosurfactant producing bacterium, Bacillus tequilensis |
title_short | Genome analysis of biosurfactant producing bacterium, Bacillus tequilensis |
title_sort | genome analysis of biosurfactant producing bacterium, bacillus tequilensis |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10237388/ https://www.ncbi.nlm.nih.gov/pubmed/37267268 http://dx.doi.org/10.1371/journal.pone.0285994 |
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