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Genome taxonomy of the genus Thalassotalea and proposal of Thalassotalea hakodatensis sp. nov. isolated from sea cucumber larvae

The genus Thalassotalea is ubiquitous in marine environments, and up to 20 species have been described so far. A Gram-staining-negative, aerobic bacterium, designated strain PTE2(T) was isolated from laboratory-reared larvae of the Japanese sea cucumber Apostichopus japonicus. Phylogenetic analysis...

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Autores principales: Yamano, Ryota, Yu, Juanwen, Haditomo, Alfabetian Harjuno Condro, Jiang, Chunqi, Mino, Sayaka, Romalde, Jesús L., Kang, Kyuhee, Sakai, Yuichi, Sawabe, Tomoo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10237450/
https://www.ncbi.nlm.nih.gov/pubmed/37267301
http://dx.doi.org/10.1371/journal.pone.0286693
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author Yamano, Ryota
Yu, Juanwen
Haditomo, Alfabetian Harjuno Condro
Jiang, Chunqi
Mino, Sayaka
Romalde, Jesús L.
Kang, Kyuhee
Sakai, Yuichi
Sawabe, Tomoo
author_facet Yamano, Ryota
Yu, Juanwen
Haditomo, Alfabetian Harjuno Condro
Jiang, Chunqi
Mino, Sayaka
Romalde, Jesús L.
Kang, Kyuhee
Sakai, Yuichi
Sawabe, Tomoo
author_sort Yamano, Ryota
collection PubMed
description The genus Thalassotalea is ubiquitous in marine environments, and up to 20 species have been described so far. A Gram-staining-negative, aerobic bacterium, designated strain PTE2(T) was isolated from laboratory-reared larvae of the Japanese sea cucumber Apostichopus japonicus. Phylogenetic analysis based on the 16S rRNA gene nucleotide sequences revealed that PTE2(T) was closely related to Thalassotalea sediminis N211(T) (= KCTC 42588(T) = MCCC 1H00116(T)) with 97.9% sequence similarity. ANI and in silico DDH values against Thalassotalea species were 68.5–77.0% and 19.7–24.6%, respectively, indicating the novelty of PTE2(T). Based on genome-based taxonomic approaches, strain PTE2(T) (= JCM 34608(T) = KCTC 82592(T)) is proposed as a new species, Thalassotalea hakodatensis sp. nov.
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spelling pubmed-102374502023-06-03 Genome taxonomy of the genus Thalassotalea and proposal of Thalassotalea hakodatensis sp. nov. isolated from sea cucumber larvae Yamano, Ryota Yu, Juanwen Haditomo, Alfabetian Harjuno Condro Jiang, Chunqi Mino, Sayaka Romalde, Jesús L. Kang, Kyuhee Sakai, Yuichi Sawabe, Tomoo PLoS One Research Article The genus Thalassotalea is ubiquitous in marine environments, and up to 20 species have been described so far. A Gram-staining-negative, aerobic bacterium, designated strain PTE2(T) was isolated from laboratory-reared larvae of the Japanese sea cucumber Apostichopus japonicus. Phylogenetic analysis based on the 16S rRNA gene nucleotide sequences revealed that PTE2(T) was closely related to Thalassotalea sediminis N211(T) (= KCTC 42588(T) = MCCC 1H00116(T)) with 97.9% sequence similarity. ANI and in silico DDH values against Thalassotalea species were 68.5–77.0% and 19.7–24.6%, respectively, indicating the novelty of PTE2(T). Based on genome-based taxonomic approaches, strain PTE2(T) (= JCM 34608(T) = KCTC 82592(T)) is proposed as a new species, Thalassotalea hakodatensis sp. nov. Public Library of Science 2023-06-02 /pmc/articles/PMC10237450/ /pubmed/37267301 http://dx.doi.org/10.1371/journal.pone.0286693 Text en © 2023 Yamano et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Yamano, Ryota
Yu, Juanwen
Haditomo, Alfabetian Harjuno Condro
Jiang, Chunqi
Mino, Sayaka
Romalde, Jesús L.
Kang, Kyuhee
Sakai, Yuichi
Sawabe, Tomoo
Genome taxonomy of the genus Thalassotalea and proposal of Thalassotalea hakodatensis sp. nov. isolated from sea cucumber larvae
title Genome taxonomy of the genus Thalassotalea and proposal of Thalassotalea hakodatensis sp. nov. isolated from sea cucumber larvae
title_full Genome taxonomy of the genus Thalassotalea and proposal of Thalassotalea hakodatensis sp. nov. isolated from sea cucumber larvae
title_fullStr Genome taxonomy of the genus Thalassotalea and proposal of Thalassotalea hakodatensis sp. nov. isolated from sea cucumber larvae
title_full_unstemmed Genome taxonomy of the genus Thalassotalea and proposal of Thalassotalea hakodatensis sp. nov. isolated from sea cucumber larvae
title_short Genome taxonomy of the genus Thalassotalea and proposal of Thalassotalea hakodatensis sp. nov. isolated from sea cucumber larvae
title_sort genome taxonomy of the genus thalassotalea and proposal of thalassotalea hakodatensis sp. nov. isolated from sea cucumber larvae
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10237450/
https://www.ncbi.nlm.nih.gov/pubmed/37267301
http://dx.doi.org/10.1371/journal.pone.0286693
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