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Genome taxonomy of the genus Thalassotalea and proposal of Thalassotalea hakodatensis sp. nov. isolated from sea cucumber larvae
The genus Thalassotalea is ubiquitous in marine environments, and up to 20 species have been described so far. A Gram-staining-negative, aerobic bacterium, designated strain PTE2(T) was isolated from laboratory-reared larvae of the Japanese sea cucumber Apostichopus japonicus. Phylogenetic analysis...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Public Library of Science
2023
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10237450/ https://www.ncbi.nlm.nih.gov/pubmed/37267301 http://dx.doi.org/10.1371/journal.pone.0286693 |
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author | Yamano, Ryota Yu, Juanwen Haditomo, Alfabetian Harjuno Condro Jiang, Chunqi Mino, Sayaka Romalde, Jesús L. Kang, Kyuhee Sakai, Yuichi Sawabe, Tomoo |
author_facet | Yamano, Ryota Yu, Juanwen Haditomo, Alfabetian Harjuno Condro Jiang, Chunqi Mino, Sayaka Romalde, Jesús L. Kang, Kyuhee Sakai, Yuichi Sawabe, Tomoo |
author_sort | Yamano, Ryota |
collection | PubMed |
description | The genus Thalassotalea is ubiquitous in marine environments, and up to 20 species have been described so far. A Gram-staining-negative, aerobic bacterium, designated strain PTE2(T) was isolated from laboratory-reared larvae of the Japanese sea cucumber Apostichopus japonicus. Phylogenetic analysis based on the 16S rRNA gene nucleotide sequences revealed that PTE2(T) was closely related to Thalassotalea sediminis N211(T) (= KCTC 42588(T) = MCCC 1H00116(T)) with 97.9% sequence similarity. ANI and in silico DDH values against Thalassotalea species were 68.5–77.0% and 19.7–24.6%, respectively, indicating the novelty of PTE2(T). Based on genome-based taxonomic approaches, strain PTE2(T) (= JCM 34608(T) = KCTC 82592(T)) is proposed as a new species, Thalassotalea hakodatensis sp. nov. |
format | Online Article Text |
id | pubmed-10237450 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-102374502023-06-03 Genome taxonomy of the genus Thalassotalea and proposal of Thalassotalea hakodatensis sp. nov. isolated from sea cucumber larvae Yamano, Ryota Yu, Juanwen Haditomo, Alfabetian Harjuno Condro Jiang, Chunqi Mino, Sayaka Romalde, Jesús L. Kang, Kyuhee Sakai, Yuichi Sawabe, Tomoo PLoS One Research Article The genus Thalassotalea is ubiquitous in marine environments, and up to 20 species have been described so far. A Gram-staining-negative, aerobic bacterium, designated strain PTE2(T) was isolated from laboratory-reared larvae of the Japanese sea cucumber Apostichopus japonicus. Phylogenetic analysis based on the 16S rRNA gene nucleotide sequences revealed that PTE2(T) was closely related to Thalassotalea sediminis N211(T) (= KCTC 42588(T) = MCCC 1H00116(T)) with 97.9% sequence similarity. ANI and in silico DDH values against Thalassotalea species were 68.5–77.0% and 19.7–24.6%, respectively, indicating the novelty of PTE2(T). Based on genome-based taxonomic approaches, strain PTE2(T) (= JCM 34608(T) = KCTC 82592(T)) is proposed as a new species, Thalassotalea hakodatensis sp. nov. Public Library of Science 2023-06-02 /pmc/articles/PMC10237450/ /pubmed/37267301 http://dx.doi.org/10.1371/journal.pone.0286693 Text en © 2023 Yamano et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Yamano, Ryota Yu, Juanwen Haditomo, Alfabetian Harjuno Condro Jiang, Chunqi Mino, Sayaka Romalde, Jesús L. Kang, Kyuhee Sakai, Yuichi Sawabe, Tomoo Genome taxonomy of the genus Thalassotalea and proposal of Thalassotalea hakodatensis sp. nov. isolated from sea cucumber larvae |
title | Genome taxonomy of the genus Thalassotalea and proposal of Thalassotalea hakodatensis sp. nov. isolated from sea cucumber larvae |
title_full | Genome taxonomy of the genus Thalassotalea and proposal of Thalassotalea hakodatensis sp. nov. isolated from sea cucumber larvae |
title_fullStr | Genome taxonomy of the genus Thalassotalea and proposal of Thalassotalea hakodatensis sp. nov. isolated from sea cucumber larvae |
title_full_unstemmed | Genome taxonomy of the genus Thalassotalea and proposal of Thalassotalea hakodatensis sp. nov. isolated from sea cucumber larvae |
title_short | Genome taxonomy of the genus Thalassotalea and proposal of Thalassotalea hakodatensis sp. nov. isolated from sea cucumber larvae |
title_sort | genome taxonomy of the genus thalassotalea and proposal of thalassotalea hakodatensis sp. nov. isolated from sea cucumber larvae |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10237450/ https://www.ncbi.nlm.nih.gov/pubmed/37267301 http://dx.doi.org/10.1371/journal.pone.0286693 |
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