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Development and Validation of a Diagnostic Model Based on Hypoxia-Related Genes in Myocardial Infarction
PURPOSE: Myocardial infarction (MI) is a common cardiovascular disease, and its underlying pathological mechanism remains unclear. We aimed to develop a diagnostic model to distinguish different subtypes of MI. PATIENTS AND METHODS: The gene expression profiles of MI from the GEO database and hypoxi...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Dove
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10238209/ https://www.ncbi.nlm.nih.gov/pubmed/37275329 http://dx.doi.org/10.2147/IJGM.S407759 |
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author | Jiang, Ke Kang, Ling Jiang, Andong Zhao, Qiang |
author_facet | Jiang, Ke Kang, Ling Jiang, Andong Zhao, Qiang |
author_sort | Jiang, Ke |
collection | PubMed |
description | PURPOSE: Myocardial infarction (MI) is a common cardiovascular disease, and its underlying pathological mechanism remains unclear. We aimed to develop a diagnostic model to distinguish different subtypes of MI. PATIENTS AND METHODS: The gene expression profiles of MI from the GEO database and hypoxia-related genes (HRGs) from MSigDB were downloaded. Then, the different MI subtypes based on HRGs were identified with unsupervised clustering. The difference of expression patterns and hypoxic-immune status among different subtypes of MI were investigated. The diagnostic model to distinguish the different subtypes of MI was developed and validated. RESULTS: Based on HRGs, MI samples were divided into two subtypes, cluster A and cluster B. A total of 211 genes showed significant changes in expression between the two subtypes. Cluster A was characterized by high hypoxia status and low immunity status. Based on weighted gene co-expression network analysis, ROC analysis and LASSO regression algorithm, 5 genes were identified as potential diagnostic markers. Finally, a diagnostic model based on these 5 genes was established, which can distinguish the two subtypes well. CONCLUSION: The five hub genes, including ANKRD36, HLTF, KIF3A, OXCT1 and VPS13A, may be associated with the different subtypes of MI. |
format | Online Article Text |
id | pubmed-10238209 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Dove |
record_format | MEDLINE/PubMed |
spelling | pubmed-102382092023-06-04 Development and Validation of a Diagnostic Model Based on Hypoxia-Related Genes in Myocardial Infarction Jiang, Ke Kang, Ling Jiang, Andong Zhao, Qiang Int J Gen Med Original Research PURPOSE: Myocardial infarction (MI) is a common cardiovascular disease, and its underlying pathological mechanism remains unclear. We aimed to develop a diagnostic model to distinguish different subtypes of MI. PATIENTS AND METHODS: The gene expression profiles of MI from the GEO database and hypoxia-related genes (HRGs) from MSigDB were downloaded. Then, the different MI subtypes based on HRGs were identified with unsupervised clustering. The difference of expression patterns and hypoxic-immune status among different subtypes of MI were investigated. The diagnostic model to distinguish the different subtypes of MI was developed and validated. RESULTS: Based on HRGs, MI samples were divided into two subtypes, cluster A and cluster B. A total of 211 genes showed significant changes in expression between the two subtypes. Cluster A was characterized by high hypoxia status and low immunity status. Based on weighted gene co-expression network analysis, ROC analysis and LASSO regression algorithm, 5 genes were identified as potential diagnostic markers. Finally, a diagnostic model based on these 5 genes was established, which can distinguish the two subtypes well. CONCLUSION: The five hub genes, including ANKRD36, HLTF, KIF3A, OXCT1 and VPS13A, may be associated with the different subtypes of MI. Dove 2023-05-29 /pmc/articles/PMC10238209/ /pubmed/37275329 http://dx.doi.org/10.2147/IJGM.S407759 Text en © 2023 Jiang et al. https://creativecommons.org/licenses/by-nc/3.0/This work is published and licensed by Dove Medical Press Limited. The full terms of this license are available at https://www.dovepress.com/terms.php and incorporate the Creative Commons Attribution – Non Commercial (unported, v3.0) License (http://creativecommons.org/licenses/by-nc/3.0/ (https://creativecommons.org/licenses/by-nc/3.0/) ). By accessing the work you hereby accept the Terms. Non-commercial uses of the work are permitted without any further permission from Dove Medical Press Limited, provided the work is properly attributed. For permission for commercial use of this work, please see paragraphs 4.2 and 5 of our Terms (https://www.dovepress.com/terms.php). |
spellingShingle | Original Research Jiang, Ke Kang, Ling Jiang, Andong Zhao, Qiang Development and Validation of a Diagnostic Model Based on Hypoxia-Related Genes in Myocardial Infarction |
title | Development and Validation of a Diagnostic Model Based on Hypoxia-Related Genes in Myocardial Infarction |
title_full | Development and Validation of a Diagnostic Model Based on Hypoxia-Related Genes in Myocardial Infarction |
title_fullStr | Development and Validation of a Diagnostic Model Based on Hypoxia-Related Genes in Myocardial Infarction |
title_full_unstemmed | Development and Validation of a Diagnostic Model Based on Hypoxia-Related Genes in Myocardial Infarction |
title_short | Development and Validation of a Diagnostic Model Based on Hypoxia-Related Genes in Myocardial Infarction |
title_sort | development and validation of a diagnostic model based on hypoxia-related genes in myocardial infarction |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10238209/ https://www.ncbi.nlm.nih.gov/pubmed/37275329 http://dx.doi.org/10.2147/IJGM.S407759 |
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