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Curated and harmonized gut microbiome 16S rRNA amplicon data from dietary fiber intervention studies in humans

Next generation amplicon sequencing has created a plethora of data from human microbiomes. The accessibility to this scientific data and its corresponding metadata is important for its reuse, to allow for new discoveries, verification of published results, and serving as path for reproducibility. Di...

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Autores principales: Rodriguez, Cynthia I., Keshavarzian, Ali, Hamaker, Bruce R., Liu, Feitong, Lunken, Genelle R., Rasmussen, Heather, Zhou, Hongwei, Tap, Julien, Swanson, Kelly S., Ukhanova, Maria, Leclerc, Marion, Gotteland, Martin, Navarrete, Paola, Kovatcheva-Datchary, Petia, Dahl, Wendy J., Martiny, Jennifer B. H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10238384/
https://www.ncbi.nlm.nih.gov/pubmed/37268699
http://dx.doi.org/10.1038/s41597-023-02254-4
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author Rodriguez, Cynthia I.
Keshavarzian, Ali
Hamaker, Bruce R.
Liu, Feitong
Lunken, Genelle R.
Rasmussen, Heather
Zhou, Hongwei
Tap, Julien
Swanson, Kelly S.
Ukhanova, Maria
Leclerc, Marion
Gotteland, Martin
Navarrete, Paola
Kovatcheva-Datchary, Petia
Dahl, Wendy J.
Martiny, Jennifer B. H.
author_facet Rodriguez, Cynthia I.
Keshavarzian, Ali
Hamaker, Bruce R.
Liu, Feitong
Lunken, Genelle R.
Rasmussen, Heather
Zhou, Hongwei
Tap, Julien
Swanson, Kelly S.
Ukhanova, Maria
Leclerc, Marion
Gotteland, Martin
Navarrete, Paola
Kovatcheva-Datchary, Petia
Dahl, Wendy J.
Martiny, Jennifer B. H.
author_sort Rodriguez, Cynthia I.
collection PubMed
description Next generation amplicon sequencing has created a plethora of data from human microbiomes. The accessibility to this scientific data and its corresponding metadata is important for its reuse, to allow for new discoveries, verification of published results, and serving as path for reproducibility. Dietary fiber consumption has been associated with a variety of health benefits that are thought to be mediated by gut microbiota. To enable direct comparisons of the response of the gut microbiome to fiber, we obtained 16S rRNA sequencing data and its corresponding metadata from 11 fiber intervention studies for a total of 2,368 samples. We provide curated and pre-processed genetic data and common metadata for comparison across the different studies.
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spelling pubmed-102383842023-06-04 Curated and harmonized gut microbiome 16S rRNA amplicon data from dietary fiber intervention studies in humans Rodriguez, Cynthia I. Keshavarzian, Ali Hamaker, Bruce R. Liu, Feitong Lunken, Genelle R. Rasmussen, Heather Zhou, Hongwei Tap, Julien Swanson, Kelly S. Ukhanova, Maria Leclerc, Marion Gotteland, Martin Navarrete, Paola Kovatcheva-Datchary, Petia Dahl, Wendy J. Martiny, Jennifer B. H. Sci Data Data Descriptor Next generation amplicon sequencing has created a plethora of data from human microbiomes. The accessibility to this scientific data and its corresponding metadata is important for its reuse, to allow for new discoveries, verification of published results, and serving as path for reproducibility. Dietary fiber consumption has been associated with a variety of health benefits that are thought to be mediated by gut microbiota. To enable direct comparisons of the response of the gut microbiome to fiber, we obtained 16S rRNA sequencing data and its corresponding metadata from 11 fiber intervention studies for a total of 2,368 samples. We provide curated and pre-processed genetic data and common metadata for comparison across the different studies. Nature Publishing Group UK 2023-06-02 /pmc/articles/PMC10238384/ /pubmed/37268699 http://dx.doi.org/10.1038/s41597-023-02254-4 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Data Descriptor
Rodriguez, Cynthia I.
Keshavarzian, Ali
Hamaker, Bruce R.
Liu, Feitong
Lunken, Genelle R.
Rasmussen, Heather
Zhou, Hongwei
Tap, Julien
Swanson, Kelly S.
Ukhanova, Maria
Leclerc, Marion
Gotteland, Martin
Navarrete, Paola
Kovatcheva-Datchary, Petia
Dahl, Wendy J.
Martiny, Jennifer B. H.
Curated and harmonized gut microbiome 16S rRNA amplicon data from dietary fiber intervention studies in humans
title Curated and harmonized gut microbiome 16S rRNA amplicon data from dietary fiber intervention studies in humans
title_full Curated and harmonized gut microbiome 16S rRNA amplicon data from dietary fiber intervention studies in humans
title_fullStr Curated and harmonized gut microbiome 16S rRNA amplicon data from dietary fiber intervention studies in humans
title_full_unstemmed Curated and harmonized gut microbiome 16S rRNA amplicon data from dietary fiber intervention studies in humans
title_short Curated and harmonized gut microbiome 16S rRNA amplicon data from dietary fiber intervention studies in humans
title_sort curated and harmonized gut microbiome 16s rrna amplicon data from dietary fiber intervention studies in humans
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10238384/
https://www.ncbi.nlm.nih.gov/pubmed/37268699
http://dx.doi.org/10.1038/s41597-023-02254-4
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