Cargando…
Genomic analysis of immunogenic cell death-related subtypes for predicting prognosis and immunotherapy outcomes in glioblastoma multiforme
Immunogenic cell death (ICD), a unique form of cancer cell death, has therapeutic potential in anti-tumour immunotherapy. The aim of this study is to explore the predictive potential of ICD in the prognosis and immunotherapy outcomes of glioblastoma multiforme (GBM). RNA sequencing data and clinical...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
De Gruyter
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10238813/ https://www.ncbi.nlm.nih.gov/pubmed/37273917 http://dx.doi.org/10.1515/med-2023-0716 |
_version_ | 1785053361911889920 |
---|---|
author | Liu, Zhiye Li, Wei You, Guoliang Hu, Zhihong Liu, Yuji Zheng, Niandong |
author_facet | Liu, Zhiye Li, Wei You, Guoliang Hu, Zhihong Liu, Yuji Zheng, Niandong |
author_sort | Liu, Zhiye |
collection | PubMed |
description | Immunogenic cell death (ICD), a unique form of cancer cell death, has therapeutic potential in anti-tumour immunotherapy. The aim of this study is to explore the predictive potential of ICD in the prognosis and immunotherapy outcomes of glioblastoma multiforme (GBM). RNA sequencing data and clinical information were downloaded from three databases. Unsupervised consistency clustering analysis was used to identify ICD-related clusters and gene clusters. Additionally, the ICD scores were determined using principal component analysis and the Boruta algorithm via dimensionality reduction techniques. Subsequently, three ICD-related clusters and three gene clusters with different prognoses were identified, with differences in specific tumour immune infiltration-related lymphocytes in these clusters. Moreover, the ICD score was well differentiated among patients with GBM, and the ICD score was considered an independent prognostic factor for patients with GBM. Furthermore, two datasets were used for the external validation of ICD scores as predictors of prognosis and immunotherapy outcomes. The validation analysis suggested that patients with high ICD scores had a worse prognosis. Additionally, a higher proportion of patients with high ICD scores were non-responsive to immunotherapy. Thus, the ICD score has the potential as a biomarker to predict the prognosis and immunotherapy outcomes of patients with GBM. |
format | Online Article Text |
id | pubmed-10238813 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | De Gruyter |
record_format | MEDLINE/PubMed |
spelling | pubmed-102388132023-06-04 Genomic analysis of immunogenic cell death-related subtypes for predicting prognosis and immunotherapy outcomes in glioblastoma multiforme Liu, Zhiye Li, Wei You, Guoliang Hu, Zhihong Liu, Yuji Zheng, Niandong Open Med (Wars) Research Article Immunogenic cell death (ICD), a unique form of cancer cell death, has therapeutic potential in anti-tumour immunotherapy. The aim of this study is to explore the predictive potential of ICD in the prognosis and immunotherapy outcomes of glioblastoma multiforme (GBM). RNA sequencing data and clinical information were downloaded from three databases. Unsupervised consistency clustering analysis was used to identify ICD-related clusters and gene clusters. Additionally, the ICD scores were determined using principal component analysis and the Boruta algorithm via dimensionality reduction techniques. Subsequently, three ICD-related clusters and three gene clusters with different prognoses were identified, with differences in specific tumour immune infiltration-related lymphocytes in these clusters. Moreover, the ICD score was well differentiated among patients with GBM, and the ICD score was considered an independent prognostic factor for patients with GBM. Furthermore, two datasets were used for the external validation of ICD scores as predictors of prognosis and immunotherapy outcomes. The validation analysis suggested that patients with high ICD scores had a worse prognosis. Additionally, a higher proportion of patients with high ICD scores were non-responsive to immunotherapy. Thus, the ICD score has the potential as a biomarker to predict the prognosis and immunotherapy outcomes of patients with GBM. De Gruyter 2023-06-02 /pmc/articles/PMC10238813/ /pubmed/37273917 http://dx.doi.org/10.1515/med-2023-0716 Text en © 2023 the author(s), published by De Gruyter https://creativecommons.org/licenses/by/4.0/This work is licensed under the Creative Commons Attribution 4.0 International License. |
spellingShingle | Research Article Liu, Zhiye Li, Wei You, Guoliang Hu, Zhihong Liu, Yuji Zheng, Niandong Genomic analysis of immunogenic cell death-related subtypes for predicting prognosis and immunotherapy outcomes in glioblastoma multiforme |
title | Genomic analysis of immunogenic cell death-related subtypes for predicting prognosis and immunotherapy outcomes in glioblastoma multiforme |
title_full | Genomic analysis of immunogenic cell death-related subtypes for predicting prognosis and immunotherapy outcomes in glioblastoma multiforme |
title_fullStr | Genomic analysis of immunogenic cell death-related subtypes for predicting prognosis and immunotherapy outcomes in glioblastoma multiforme |
title_full_unstemmed | Genomic analysis of immunogenic cell death-related subtypes for predicting prognosis and immunotherapy outcomes in glioblastoma multiforme |
title_short | Genomic analysis of immunogenic cell death-related subtypes for predicting prognosis and immunotherapy outcomes in glioblastoma multiforme |
title_sort | genomic analysis of immunogenic cell death-related subtypes for predicting prognosis and immunotherapy outcomes in glioblastoma multiforme |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10238813/ https://www.ncbi.nlm.nih.gov/pubmed/37273917 http://dx.doi.org/10.1515/med-2023-0716 |
work_keys_str_mv | AT liuzhiye genomicanalysisofimmunogeniccelldeathrelatedsubtypesforpredictingprognosisandimmunotherapyoutcomesinglioblastomamultiforme AT liwei genomicanalysisofimmunogeniccelldeathrelatedsubtypesforpredictingprognosisandimmunotherapyoutcomesinglioblastomamultiforme AT youguoliang genomicanalysisofimmunogeniccelldeathrelatedsubtypesforpredictingprognosisandimmunotherapyoutcomesinglioblastomamultiforme AT huzhihong genomicanalysisofimmunogeniccelldeathrelatedsubtypesforpredictingprognosisandimmunotherapyoutcomesinglioblastomamultiforme AT liuyuji genomicanalysisofimmunogeniccelldeathrelatedsubtypesforpredictingprognosisandimmunotherapyoutcomesinglioblastomamultiforme AT zhengniandong genomicanalysisofimmunogeniccelldeathrelatedsubtypesforpredictingprognosisandimmunotherapyoutcomesinglioblastomamultiforme |