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Current trends in RNA virus detection through metatranscriptome sequencing data

With advances in sequencing technology, metatranscriptome sequencing from a variety of environmental and biological sources has revealed the existence of various previously unknown RNA viruses. This review presents recent major RNA virome studies sampled from invertebrate and vertebrate species as w...

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Detalles Bibliográficos
Autores principales: Nakagawa, So, Sakaguchi, Shoichi, Ogura, Atsushi, Mineta, Katsuhiko, Endo, Toshinori, Suzuki, Yoshiyuki, Gojobori, Takashi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10240339/
https://www.ncbi.nlm.nih.gov/pubmed/37163224
http://dx.doi.org/10.1002/2211-5463.13626
Descripción
Sumario:With advances in sequencing technology, metatranscriptome sequencing from a variety of environmental and biological sources has revealed the existence of various previously unknown RNA viruses. This review presents recent major RNA virome studies sampled from invertebrate and vertebrate species as well as aquatic environments. In particular, we focus on severe acute respiratory syndrome coronavirus‐2 (SARS‐CoV‐2) and related RNA virus identification through metatranscriptome sequencing analyses. Recently developed bioinformatics software and databases for RNA virus identification are introduced. A relationship between newly identified RNA viruses and endogenous viral elements in host genomes is also discussed.