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Current trends in RNA virus detection through metatranscriptome sequencing data
With advances in sequencing technology, metatranscriptome sequencing from a variety of environmental and biological sources has revealed the existence of various previously unknown RNA viruses. This review presents recent major RNA virome studies sampled from invertebrate and vertebrate species as w...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10240339/ https://www.ncbi.nlm.nih.gov/pubmed/37163224 http://dx.doi.org/10.1002/2211-5463.13626 |
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author | Nakagawa, So Sakaguchi, Shoichi Ogura, Atsushi Mineta, Katsuhiko Endo, Toshinori Suzuki, Yoshiyuki Gojobori, Takashi |
author_facet | Nakagawa, So Sakaguchi, Shoichi Ogura, Atsushi Mineta, Katsuhiko Endo, Toshinori Suzuki, Yoshiyuki Gojobori, Takashi |
author_sort | Nakagawa, So |
collection | PubMed |
description | With advances in sequencing technology, metatranscriptome sequencing from a variety of environmental and biological sources has revealed the existence of various previously unknown RNA viruses. This review presents recent major RNA virome studies sampled from invertebrate and vertebrate species as well as aquatic environments. In particular, we focus on severe acute respiratory syndrome coronavirus‐2 (SARS‐CoV‐2) and related RNA virus identification through metatranscriptome sequencing analyses. Recently developed bioinformatics software and databases for RNA virus identification are introduced. A relationship between newly identified RNA viruses and endogenous viral elements in host genomes is also discussed. |
format | Online Article Text |
id | pubmed-10240339 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-102403392023-06-06 Current trends in RNA virus detection through metatranscriptome sequencing data Nakagawa, So Sakaguchi, Shoichi Ogura, Atsushi Mineta, Katsuhiko Endo, Toshinori Suzuki, Yoshiyuki Gojobori, Takashi FEBS Open Bio Reviews With advances in sequencing technology, metatranscriptome sequencing from a variety of environmental and biological sources has revealed the existence of various previously unknown RNA viruses. This review presents recent major RNA virome studies sampled from invertebrate and vertebrate species as well as aquatic environments. In particular, we focus on severe acute respiratory syndrome coronavirus‐2 (SARS‐CoV‐2) and related RNA virus identification through metatranscriptome sequencing analyses. Recently developed bioinformatics software and databases for RNA virus identification are introduced. A relationship between newly identified RNA viruses and endogenous viral elements in host genomes is also discussed. John Wiley and Sons Inc. 2023-05-20 /pmc/articles/PMC10240339/ /pubmed/37163224 http://dx.doi.org/10.1002/2211-5463.13626 Text en © 2023 The Authors. FEBS Open Bio published by John Wiley & Sons Ltd on behalf of Federation of European Biochemical Societies. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Reviews Nakagawa, So Sakaguchi, Shoichi Ogura, Atsushi Mineta, Katsuhiko Endo, Toshinori Suzuki, Yoshiyuki Gojobori, Takashi Current trends in RNA virus detection through metatranscriptome sequencing data |
title | Current trends in RNA virus detection through metatranscriptome sequencing data |
title_full | Current trends in RNA virus detection through metatranscriptome sequencing data |
title_fullStr | Current trends in RNA virus detection through metatranscriptome sequencing data |
title_full_unstemmed | Current trends in RNA virus detection through metatranscriptome sequencing data |
title_short | Current trends in RNA virus detection through metatranscriptome sequencing data |
title_sort | current trends in rna virus detection through metatranscriptome sequencing data |
topic | Reviews |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10240339/ https://www.ncbi.nlm.nih.gov/pubmed/37163224 http://dx.doi.org/10.1002/2211-5463.13626 |
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