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How to establish and maintain a multimodal animal research dataset using DataLad

Sharing of data, processing tools, and workflows require open data hosting services and management tools. Despite FAIR guidelines and the increasing demand from funding agencies and publishers, only a few animal studies share all experimental data and processing tools. We present a step-by-step prot...

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Autores principales: Kalantari, Aref, Szczepanik, Michał, Heunis, Stephan, Mönch, Christian, Hanke, Michael, Wachtler, Thomas, Aswendt, Markus
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10241774/
https://www.ncbi.nlm.nih.gov/pubmed/37277500
http://dx.doi.org/10.1038/s41597-023-02242-8
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author Kalantari, Aref
Szczepanik, Michał
Heunis, Stephan
Mönch, Christian
Hanke, Michael
Wachtler, Thomas
Aswendt, Markus
author_facet Kalantari, Aref
Szczepanik, Michał
Heunis, Stephan
Mönch, Christian
Hanke, Michael
Wachtler, Thomas
Aswendt, Markus
author_sort Kalantari, Aref
collection PubMed
description Sharing of data, processing tools, and workflows require open data hosting services and management tools. Despite FAIR guidelines and the increasing demand from funding agencies and publishers, only a few animal studies share all experimental data and processing tools. We present a step-by-step protocol to perform version control and remote collaboration for large multimodal datasets. A data management plan was introduced to ensure data security in addition to a homogeneous file and folder structure. Changes to the data were automatically tracked using DataLad and all data was shared on the research data platform GIN. This simple and cost-effective workflow facilitates the adoption of FAIR data logistics and processing workflows by making the raw and processed data available and providing the technical infrastructure to independently reproduce the data processing steps. It enables the community to collect heterogeneously acquired and stored datasets not limited to a specific category of data and serves as a technical infrastructure blueprint with rich potential to improve data handling at other sites and extend to other research areas.
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spelling pubmed-102417742023-06-07 How to establish and maintain a multimodal animal research dataset using DataLad Kalantari, Aref Szczepanik, Michał Heunis, Stephan Mönch, Christian Hanke, Michael Wachtler, Thomas Aswendt, Markus Sci Data Article Sharing of data, processing tools, and workflows require open data hosting services and management tools. Despite FAIR guidelines and the increasing demand from funding agencies and publishers, only a few animal studies share all experimental data and processing tools. We present a step-by-step protocol to perform version control and remote collaboration for large multimodal datasets. A data management plan was introduced to ensure data security in addition to a homogeneous file and folder structure. Changes to the data were automatically tracked using DataLad and all data was shared on the research data platform GIN. This simple and cost-effective workflow facilitates the adoption of FAIR data logistics and processing workflows by making the raw and processed data available and providing the technical infrastructure to independently reproduce the data processing steps. It enables the community to collect heterogeneously acquired and stored datasets not limited to a specific category of data and serves as a technical infrastructure blueprint with rich potential to improve data handling at other sites and extend to other research areas. Nature Publishing Group UK 2023-06-05 /pmc/articles/PMC10241774/ /pubmed/37277500 http://dx.doi.org/10.1038/s41597-023-02242-8 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Kalantari, Aref
Szczepanik, Michał
Heunis, Stephan
Mönch, Christian
Hanke, Michael
Wachtler, Thomas
Aswendt, Markus
How to establish and maintain a multimodal animal research dataset using DataLad
title How to establish and maintain a multimodal animal research dataset using DataLad
title_full How to establish and maintain a multimodal animal research dataset using DataLad
title_fullStr How to establish and maintain a multimodal animal research dataset using DataLad
title_full_unstemmed How to establish and maintain a multimodal animal research dataset using DataLad
title_short How to establish and maintain a multimodal animal research dataset using DataLad
title_sort how to establish and maintain a multimodal animal research dataset using datalad
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10241774/
https://www.ncbi.nlm.nih.gov/pubmed/37277500
http://dx.doi.org/10.1038/s41597-023-02242-8
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