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Clinical subtyping using community detection: Limited utility?

OBJECTIVES: To discover psychiatric subtypes, researchers are adopting a method called community detection. This method was not subjected to the same scrutiny in the psychiatric literature as traditional clustering methods. Furthermore, many community detection algorithms have been developed without...

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Autores principales: Agelink van Rentergem, Joost A., Bathelt, Joe, Geurts, Hilde M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10242199/
https://www.ncbi.nlm.nih.gov/pubmed/36415153
http://dx.doi.org/10.1002/mpr.1951
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author Agelink van Rentergem, Joost A.
Bathelt, Joe
Geurts, Hilde M.
author_facet Agelink van Rentergem, Joost A.
Bathelt, Joe
Geurts, Hilde M.
author_sort Agelink van Rentergem, Joost A.
collection PubMed
description OBJECTIVES: To discover psychiatric subtypes, researchers are adopting a method called community detection. This method was not subjected to the same scrutiny in the psychiatric literature as traditional clustering methods. Furthermore, many community detection algorithms have been developed without psychiatric sample sizes and variable numbers in mind. We aim to provide clarity to researchers on the utility of this method. METHODS: We provide an introduction to community detection algorithms, specifically describing the crucial differences between correlation‐based and distance‐based community detection. We compare community detection results to results of traditional methods in a simulation study representing typical psychiatry settings, using three conceptualizations of how subtypes might differ. RESULTS: We discovered that the number of recovered subgroups was often incorrect with several community detection algorithms. Correlation‐based community detection fared better than distance‐based community detection, and performed relatively well with smaller sample sizes. Latent profile analysis was more consistent in recovering subtypes. Whether methods were successful depended on how differences were introduced. CONCLUSIONS: Traditional methods like latent profile analysis remain reasonable choices. Furthermore, results depend on assumptions and theoretical choices underlying subtyping analyses, which researchers need to consider before drawing conclusions on subtypes. Employing multiple subtyping methods to establish method dependency is recommended.
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spelling pubmed-102421992023-06-07 Clinical subtyping using community detection: Limited utility? Agelink van Rentergem, Joost A. Bathelt, Joe Geurts, Hilde M. Int J Methods Psychiatr Res Original Articles OBJECTIVES: To discover psychiatric subtypes, researchers are adopting a method called community detection. This method was not subjected to the same scrutiny in the psychiatric literature as traditional clustering methods. Furthermore, many community detection algorithms have been developed without psychiatric sample sizes and variable numbers in mind. We aim to provide clarity to researchers on the utility of this method. METHODS: We provide an introduction to community detection algorithms, specifically describing the crucial differences between correlation‐based and distance‐based community detection. We compare community detection results to results of traditional methods in a simulation study representing typical psychiatry settings, using three conceptualizations of how subtypes might differ. RESULTS: We discovered that the number of recovered subgroups was often incorrect with several community detection algorithms. Correlation‐based community detection fared better than distance‐based community detection, and performed relatively well with smaller sample sizes. Latent profile analysis was more consistent in recovering subtypes. Whether methods were successful depended on how differences were introduced. CONCLUSIONS: Traditional methods like latent profile analysis remain reasonable choices. Furthermore, results depend on assumptions and theoretical choices underlying subtyping analyses, which researchers need to consider before drawing conclusions on subtypes. Employing multiple subtyping methods to establish method dependency is recommended. John Wiley and Sons Inc. 2022-11-22 /pmc/articles/PMC10242199/ /pubmed/36415153 http://dx.doi.org/10.1002/mpr.1951 Text en © 2022 The Authors. International Journal of Methods in Psychiatric Research published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Agelink van Rentergem, Joost A.
Bathelt, Joe
Geurts, Hilde M.
Clinical subtyping using community detection: Limited utility?
title Clinical subtyping using community detection: Limited utility?
title_full Clinical subtyping using community detection: Limited utility?
title_fullStr Clinical subtyping using community detection: Limited utility?
title_full_unstemmed Clinical subtyping using community detection: Limited utility?
title_short Clinical subtyping using community detection: Limited utility?
title_sort clinical subtyping using community detection: limited utility?
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10242199/
https://www.ncbi.nlm.nih.gov/pubmed/36415153
http://dx.doi.org/10.1002/mpr.1951
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