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Clinical subtyping using community detection: Limited utility?
OBJECTIVES: To discover psychiatric subtypes, researchers are adopting a method called community detection. This method was not subjected to the same scrutiny in the psychiatric literature as traditional clustering methods. Furthermore, many community detection algorithms have been developed without...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2022
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10242199/ https://www.ncbi.nlm.nih.gov/pubmed/36415153 http://dx.doi.org/10.1002/mpr.1951 |
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author | Agelink van Rentergem, Joost A. Bathelt, Joe Geurts, Hilde M. |
author_facet | Agelink van Rentergem, Joost A. Bathelt, Joe Geurts, Hilde M. |
author_sort | Agelink van Rentergem, Joost A. |
collection | PubMed |
description | OBJECTIVES: To discover psychiatric subtypes, researchers are adopting a method called community detection. This method was not subjected to the same scrutiny in the psychiatric literature as traditional clustering methods. Furthermore, many community detection algorithms have been developed without psychiatric sample sizes and variable numbers in mind. We aim to provide clarity to researchers on the utility of this method. METHODS: We provide an introduction to community detection algorithms, specifically describing the crucial differences between correlation‐based and distance‐based community detection. We compare community detection results to results of traditional methods in a simulation study representing typical psychiatry settings, using three conceptualizations of how subtypes might differ. RESULTS: We discovered that the number of recovered subgroups was often incorrect with several community detection algorithms. Correlation‐based community detection fared better than distance‐based community detection, and performed relatively well with smaller sample sizes. Latent profile analysis was more consistent in recovering subtypes. Whether methods were successful depended on how differences were introduced. CONCLUSIONS: Traditional methods like latent profile analysis remain reasonable choices. Furthermore, results depend on assumptions and theoretical choices underlying subtyping analyses, which researchers need to consider before drawing conclusions on subtypes. Employing multiple subtyping methods to establish method dependency is recommended. |
format | Online Article Text |
id | pubmed-10242199 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2022 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-102421992023-06-07 Clinical subtyping using community detection: Limited utility? Agelink van Rentergem, Joost A. Bathelt, Joe Geurts, Hilde M. Int J Methods Psychiatr Res Original Articles OBJECTIVES: To discover psychiatric subtypes, researchers are adopting a method called community detection. This method was not subjected to the same scrutiny in the psychiatric literature as traditional clustering methods. Furthermore, many community detection algorithms have been developed without psychiatric sample sizes and variable numbers in mind. We aim to provide clarity to researchers on the utility of this method. METHODS: We provide an introduction to community detection algorithms, specifically describing the crucial differences between correlation‐based and distance‐based community detection. We compare community detection results to results of traditional methods in a simulation study representing typical psychiatry settings, using three conceptualizations of how subtypes might differ. RESULTS: We discovered that the number of recovered subgroups was often incorrect with several community detection algorithms. Correlation‐based community detection fared better than distance‐based community detection, and performed relatively well with smaller sample sizes. Latent profile analysis was more consistent in recovering subtypes. Whether methods were successful depended on how differences were introduced. CONCLUSIONS: Traditional methods like latent profile analysis remain reasonable choices. Furthermore, results depend on assumptions and theoretical choices underlying subtyping analyses, which researchers need to consider before drawing conclusions on subtypes. Employing multiple subtyping methods to establish method dependency is recommended. John Wiley and Sons Inc. 2022-11-22 /pmc/articles/PMC10242199/ /pubmed/36415153 http://dx.doi.org/10.1002/mpr.1951 Text en © 2022 The Authors. International Journal of Methods in Psychiatric Research published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Articles Agelink van Rentergem, Joost A. Bathelt, Joe Geurts, Hilde M. Clinical subtyping using community detection: Limited utility? |
title | Clinical subtyping using community detection: Limited utility? |
title_full | Clinical subtyping using community detection: Limited utility? |
title_fullStr | Clinical subtyping using community detection: Limited utility? |
title_full_unstemmed | Clinical subtyping using community detection: Limited utility? |
title_short | Clinical subtyping using community detection: Limited utility? |
title_sort | clinical subtyping using community detection: limited utility? |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10242199/ https://www.ncbi.nlm.nih.gov/pubmed/36415153 http://dx.doi.org/10.1002/mpr.1951 |
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