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Multi‐omics analysis of the oncogenic value of copper Metabolism‐Related protein COMMD2 in human cancers

BACKGROUND: The copper metabolism MURR1 domain (COMMD) protein family is involved in tumorigenicity of malignant tumors. However, as the member of COMMD, the role of COMMD2 in human tumors remains unknown. METHODS: We used The Cancer Genome Atlas (TCGA), Genotype Tissue Expression (GTEx), Human Prot...

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Autores principales: Tai, Panpan, Wang, Zhanwang, Chen, Xinyu, Chen, Aiyan, Gong, Lian, Cheng, Yaxin, Cao, Ke
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2022
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10242316/
https://www.ncbi.nlm.nih.gov/pubmed/36205192
http://dx.doi.org/10.1002/cam4.5320
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author Tai, Panpan
Wang, Zhanwang
Chen, Xinyu
Chen, Aiyan
Gong, Lian
Cheng, Yaxin
Cao, Ke
author_facet Tai, Panpan
Wang, Zhanwang
Chen, Xinyu
Chen, Aiyan
Gong, Lian
Cheng, Yaxin
Cao, Ke
author_sort Tai, Panpan
collection PubMed
description BACKGROUND: The copper metabolism MURR1 domain (COMMD) protein family is involved in tumorigenicity of malignant tumors. However, as the member of COMMD, the role of COMMD2 in human tumors remains unknown. METHODS: We used The Cancer Genome Atlas (TCGA), Genotype Tissue Expression (GTEx), Human Protein Atlas (HPA) database, Cancer Cell Line Encyclopedia (CCLE) platform, univariate Cox regression analysis, Kaplan–Meier curve, cBioPortal, UALCAN database, Sangerbox online platform, GSCA database gene set enrichment analysis (GSEA), and GeneMANIA to analyze the expression of COMMD2, its prognostic values, genomic alteration patterns, and the correlation with tumor stemness, tumor mutational burden (TMB), microsatellite instability (MSI), and immune infiltrates, drug sensitivity, and gene function enrichment in pan‐cancer. qRT‐PCR, CCK‐8, EdU, wound healing, and transwell migration assays were performed to confirm the function of COMMD2. RESULTS: COMMD2 was strongly expressed in most cancer types. Elevated COMMD2 expression affects the prognosis, clinicopathological stage, and molecular or immune subtypes of various tumors. Moreover, promoter hypomethylation and mutations in the COMMD2 gene may be associated with its high expression and poor survival. Additionally, we discovered that COMMD2 expression was linked to tumor stemness, TMB, MSI, immune cell infiltration, immune‐checkpoint inhibitors, and drug sensitivity in pan‐cancer. Furthermore, the COMMD2 gene co‐expression network is constructed with GSEA analysis, displaying significant interaction of COMMD2 with E2F targets, G2‐M checkpoint, and mitotic spindle in bladder cancer (BLCA). Finally, RNA interference data showed suppression of COMMD2 prevented proliferation and migration of BLCA and uterine corpus endometrial carcinoma (UCEC) cells. CONCLUSION: Our findings shed light on the COMMD2 functions in human cancers and demonstrate that it is a promising prognostic biomarker and therapeutic target in pan‐cancer.
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spelling pubmed-102423162023-06-07 Multi‐omics analysis of the oncogenic value of copper Metabolism‐Related protein COMMD2 in human cancers Tai, Panpan Wang, Zhanwang Chen, Xinyu Chen, Aiyan Gong, Lian Cheng, Yaxin Cao, Ke Cancer Med Research Articles BACKGROUND: The copper metabolism MURR1 domain (COMMD) protein family is involved in tumorigenicity of malignant tumors. However, as the member of COMMD, the role of COMMD2 in human tumors remains unknown. METHODS: We used The Cancer Genome Atlas (TCGA), Genotype Tissue Expression (GTEx), Human Protein Atlas (HPA) database, Cancer Cell Line Encyclopedia (CCLE) platform, univariate Cox regression analysis, Kaplan–Meier curve, cBioPortal, UALCAN database, Sangerbox online platform, GSCA database gene set enrichment analysis (GSEA), and GeneMANIA to analyze the expression of COMMD2, its prognostic values, genomic alteration patterns, and the correlation with tumor stemness, tumor mutational burden (TMB), microsatellite instability (MSI), and immune infiltrates, drug sensitivity, and gene function enrichment in pan‐cancer. qRT‐PCR, CCK‐8, EdU, wound healing, and transwell migration assays were performed to confirm the function of COMMD2. RESULTS: COMMD2 was strongly expressed in most cancer types. Elevated COMMD2 expression affects the prognosis, clinicopathological stage, and molecular or immune subtypes of various tumors. Moreover, promoter hypomethylation and mutations in the COMMD2 gene may be associated with its high expression and poor survival. Additionally, we discovered that COMMD2 expression was linked to tumor stemness, TMB, MSI, immune cell infiltration, immune‐checkpoint inhibitors, and drug sensitivity in pan‐cancer. Furthermore, the COMMD2 gene co‐expression network is constructed with GSEA analysis, displaying significant interaction of COMMD2 with E2F targets, G2‐M checkpoint, and mitotic spindle in bladder cancer (BLCA). Finally, RNA interference data showed suppression of COMMD2 prevented proliferation and migration of BLCA and uterine corpus endometrial carcinoma (UCEC) cells. CONCLUSION: Our findings shed light on the COMMD2 functions in human cancers and demonstrate that it is a promising prognostic biomarker and therapeutic target in pan‐cancer. John Wiley and Sons Inc. 2022-10-07 /pmc/articles/PMC10242316/ /pubmed/36205192 http://dx.doi.org/10.1002/cam4.5320 Text en © 2022 The Authors. Cancer Medicine published by John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Tai, Panpan
Wang, Zhanwang
Chen, Xinyu
Chen, Aiyan
Gong, Lian
Cheng, Yaxin
Cao, Ke
Multi‐omics analysis of the oncogenic value of copper Metabolism‐Related protein COMMD2 in human cancers
title Multi‐omics analysis of the oncogenic value of copper Metabolism‐Related protein COMMD2 in human cancers
title_full Multi‐omics analysis of the oncogenic value of copper Metabolism‐Related protein COMMD2 in human cancers
title_fullStr Multi‐omics analysis of the oncogenic value of copper Metabolism‐Related protein COMMD2 in human cancers
title_full_unstemmed Multi‐omics analysis of the oncogenic value of copper Metabolism‐Related protein COMMD2 in human cancers
title_short Multi‐omics analysis of the oncogenic value of copper Metabolism‐Related protein COMMD2 in human cancers
title_sort multi‐omics analysis of the oncogenic value of copper metabolism‐related protein commd2 in human cancers
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10242316/
https://www.ncbi.nlm.nih.gov/pubmed/36205192
http://dx.doi.org/10.1002/cam4.5320
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