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dsSurvival 2.0: privacy enhancing survival curves for survival models in the federated DataSHIELD analysis system
OBJECTIVE: Survival models are used extensively in biomedical sciences, where they allow the investigation of the effect of exposures on health outcomes. It is desirable to use diverse data sets in survival analyses, because this offers increased statistical power and generalisability of results. Ho...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10243006/ https://www.ncbi.nlm.nih.gov/pubmed/37280717 http://dx.doi.org/10.1186/s13104-023-06372-5 |
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author | Banerjee, Soumya Bishop, Tom R. P. |
author_facet | Banerjee, Soumya Bishop, Tom R. P. |
author_sort | Banerjee, Soumya |
collection | PubMed |
description | OBJECTIVE: Survival models are used extensively in biomedical sciences, where they allow the investigation of the effect of exposures on health outcomes. It is desirable to use diverse data sets in survival analyses, because this offers increased statistical power and generalisability of results. However, there are often challenges with bringing data together in one location or following an analysis plan and sharing results. DataSHIELD is an analysis platform that helps users to overcome these ethical, governance and process difficulties. It allows users to analyse data remotely, using functions that are built to restrict access to the detailed data items (federated analysis). Previous works have provided survival modelling functionality in DataSHIELD (dsSurvival package), but there is a requirement to provide functions that offer privacy enhancing survival curves that retain useful information. RESULTS: We introduce an enhanced version of the dsSurvival package which offers privacy enhancing survival curves for DataSHIELD. Different methods for enhancing privacy were evaluated for their effectiveness in enhancing privacy while maintaining utility. We demonstrated how our selected method could enhance privacy in different scenarios using real survival data. The details of how DataSHIELD can be used to generate survival curves can be found in the associated tutorial. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13104-023-06372-5. |
format | Online Article Text |
id | pubmed-10243006 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-102430062023-06-07 dsSurvival 2.0: privacy enhancing survival curves for survival models in the federated DataSHIELD analysis system Banerjee, Soumya Bishop, Tom R. P. BMC Res Notes Research Note OBJECTIVE: Survival models are used extensively in biomedical sciences, where they allow the investigation of the effect of exposures on health outcomes. It is desirable to use diverse data sets in survival analyses, because this offers increased statistical power and generalisability of results. However, there are often challenges with bringing data together in one location or following an analysis plan and sharing results. DataSHIELD is an analysis platform that helps users to overcome these ethical, governance and process difficulties. It allows users to analyse data remotely, using functions that are built to restrict access to the detailed data items (federated analysis). Previous works have provided survival modelling functionality in DataSHIELD (dsSurvival package), but there is a requirement to provide functions that offer privacy enhancing survival curves that retain useful information. RESULTS: We introduce an enhanced version of the dsSurvival package which offers privacy enhancing survival curves for DataSHIELD. Different methods for enhancing privacy were evaluated for their effectiveness in enhancing privacy while maintaining utility. We demonstrated how our selected method could enhance privacy in different scenarios using real survival data. The details of how DataSHIELD can be used to generate survival curves can be found in the associated tutorial. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s13104-023-06372-5. BioMed Central 2023-06-06 /pmc/articles/PMC10243006/ /pubmed/37280717 http://dx.doi.org/10.1186/s13104-023-06372-5 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/ (https://creativecommons.org/publicdomain/zero/1.0/) ) applies to the data made available in this article, unless otherwise stated in a credit line to the data. |
spellingShingle | Research Note Banerjee, Soumya Bishop, Tom R. P. dsSurvival 2.0: privacy enhancing survival curves for survival models in the federated DataSHIELD analysis system |
title | dsSurvival 2.0: privacy enhancing survival curves for survival models in the federated DataSHIELD analysis system |
title_full | dsSurvival 2.0: privacy enhancing survival curves for survival models in the federated DataSHIELD analysis system |
title_fullStr | dsSurvival 2.0: privacy enhancing survival curves for survival models in the federated DataSHIELD analysis system |
title_full_unstemmed | dsSurvival 2.0: privacy enhancing survival curves for survival models in the federated DataSHIELD analysis system |
title_short | dsSurvival 2.0: privacy enhancing survival curves for survival models in the federated DataSHIELD analysis system |
title_sort | dssurvival 2.0: privacy enhancing survival curves for survival models in the federated datashield analysis system |
topic | Research Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10243006/ https://www.ncbi.nlm.nih.gov/pubmed/37280717 http://dx.doi.org/10.1186/s13104-023-06372-5 |
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