Cargando…
Detecting gene breakpoints in noisy genome sequences using position-annotated colored de-Bruijn graphs
BACKGROUND: Identifying the locations of gene breakpoints between species of different taxonomic groups can provide useful insights into the underlying evolutionary processes. Given the exact locations of their genes, the breakpoints can be computed without much effort. However, often, existing gene...
Autores principales: | Fiedler, Lisa, Bernt, Matthias, Middendorf, Martin, Stadler, Peter F. |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10243065/ https://www.ncbi.nlm.nih.gov/pubmed/37277700 http://dx.doi.org/10.1186/s12859-023-05371-4 |
Ejemplares similares
-
Fully automated annotation of mitochondrial genomes using a cluster-based approach with de Bruijn graphs
por: Fiedler, Lisa, et al.
Publicado: (2023) -
What is the difference between the breakpoint graph and the de Bruijn graph?
por: Lin, Yu, et al.
Publicado: (2014) -
Population-scale detection of non-reference sequence variants using colored de Bruijn graphs
por: Krannich, Thomas, et al.
Publicado: (2021) -
Alignment- and reference-free phylogenomics with colored de Bruijn graphs
por: Wittler, Roland
Publicado: (2020) -
Building large updatable colored de Bruijn graphs via merging
por: Muggli, Martin D, et al.
Publicado: (2019)