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Screening and identification of the core immune‐related genes and immune cell infiltration in severe burns and sepsis
Severe burns often have a high mortality rate due to sepsis, but the genetic and immune crosstalk between them remains unclear. In the present study, the GSE77791 and GSE95233 datasets were analysed to identify immune‐related differentially expressed genes (DEGs) involved in disease progression in b...
Autores principales: | , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10243159/ https://www.ncbi.nlm.nih.gov/pubmed/37060578 http://dx.doi.org/10.1111/jcmm.17749 |
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author | Su, Wenxing Li, Wei Zhang, Yuanyuan Wang, Kuan Chen, Maolin Chen, Xiaoming Li, Dazhuang Zhang, Ping Yu, Daojiang |
author_facet | Su, Wenxing Li, Wei Zhang, Yuanyuan Wang, Kuan Chen, Maolin Chen, Xiaoming Li, Dazhuang Zhang, Ping Yu, Daojiang |
author_sort | Su, Wenxing |
collection | PubMed |
description | Severe burns often have a high mortality rate due to sepsis, but the genetic and immune crosstalk between them remains unclear. In the present study, the GSE77791 and GSE95233 datasets were analysed to identify immune‐related differentially expressed genes (DEGs) involved in disease progression in both burns and sepsis. Subsequently, weighted gene coexpression network analysis (WGCNA), gene enrichment analysis, protein–protein interaction (PPI) network construction, immune cell infiltration analysis, core gene identification, coexpression network analysis and clinical correlation analysis were performed. A total of 282 common DEGs associated with burns and sepsis were identified. Kyoto Encyclopedia of Genes and Genomes pathway analysis identified the following enriched pathways in burns and sepsis: metabolic pathways; complement and coagulation cascades; legionellosis; starch and sucrose metabolism; and ferroptosis. Finally, six core DEGs were identified, namely, IL10, RETN, THBS1, FGF13, LCN2 and MMP9. Correlation analysis showed that some core DEGs were significantly associated with simultaneous dysregulation of immune cells. Of these, RETN upregulation was associated with a worse prognosis. The immune‐related genes and dysregulated immune cells in severe burns and sepsis provide potential research directions for diagnosis and treatment. |
format | Online Article Text |
id | pubmed-10243159 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-102431592023-06-07 Screening and identification of the core immune‐related genes and immune cell infiltration in severe burns and sepsis Su, Wenxing Li, Wei Zhang, Yuanyuan Wang, Kuan Chen, Maolin Chen, Xiaoming Li, Dazhuang Zhang, Ping Yu, Daojiang J Cell Mol Med Original Articles Severe burns often have a high mortality rate due to sepsis, but the genetic and immune crosstalk between them remains unclear. In the present study, the GSE77791 and GSE95233 datasets were analysed to identify immune‐related differentially expressed genes (DEGs) involved in disease progression in both burns and sepsis. Subsequently, weighted gene coexpression network analysis (WGCNA), gene enrichment analysis, protein–protein interaction (PPI) network construction, immune cell infiltration analysis, core gene identification, coexpression network analysis and clinical correlation analysis were performed. A total of 282 common DEGs associated with burns and sepsis were identified. Kyoto Encyclopedia of Genes and Genomes pathway analysis identified the following enriched pathways in burns and sepsis: metabolic pathways; complement and coagulation cascades; legionellosis; starch and sucrose metabolism; and ferroptosis. Finally, six core DEGs were identified, namely, IL10, RETN, THBS1, FGF13, LCN2 and MMP9. Correlation analysis showed that some core DEGs were significantly associated with simultaneous dysregulation of immune cells. Of these, RETN upregulation was associated with a worse prognosis. The immune‐related genes and dysregulated immune cells in severe burns and sepsis provide potential research directions for diagnosis and treatment. John Wiley and Sons Inc. 2023-04-15 /pmc/articles/PMC10243159/ /pubmed/37060578 http://dx.doi.org/10.1111/jcmm.17749 Text en © 2023 The Authors. Journal of Cellular and Molecular Medicine published by Foundation for Cellular and Molecular Medicine and John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Articles Su, Wenxing Li, Wei Zhang, Yuanyuan Wang, Kuan Chen, Maolin Chen, Xiaoming Li, Dazhuang Zhang, Ping Yu, Daojiang Screening and identification of the core immune‐related genes and immune cell infiltration in severe burns and sepsis |
title | Screening and identification of the core immune‐related genes and immune cell infiltration in severe burns and sepsis |
title_full | Screening and identification of the core immune‐related genes and immune cell infiltration in severe burns and sepsis |
title_fullStr | Screening and identification of the core immune‐related genes and immune cell infiltration in severe burns and sepsis |
title_full_unstemmed | Screening and identification of the core immune‐related genes and immune cell infiltration in severe burns and sepsis |
title_short | Screening and identification of the core immune‐related genes and immune cell infiltration in severe burns and sepsis |
title_sort | screening and identification of the core immune‐related genes and immune cell infiltration in severe burns and sepsis |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10243159/ https://www.ncbi.nlm.nih.gov/pubmed/37060578 http://dx.doi.org/10.1111/jcmm.17749 |
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