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Screening and identification of the core immune‐related genes and immune cell infiltration in severe burns and sepsis

Severe burns often have a high mortality rate due to sepsis, but the genetic and immune crosstalk between them remains unclear. In the present study, the GSE77791 and GSE95233 datasets were analysed to identify immune‐related differentially expressed genes (DEGs) involved in disease progression in b...

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Autores principales: Su, Wenxing, Li, Wei, Zhang, Yuanyuan, Wang, Kuan, Chen, Maolin, Chen, Xiaoming, Li, Dazhuang, Zhang, Ping, Yu, Daojiang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10243159/
https://www.ncbi.nlm.nih.gov/pubmed/37060578
http://dx.doi.org/10.1111/jcmm.17749
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author Su, Wenxing
Li, Wei
Zhang, Yuanyuan
Wang, Kuan
Chen, Maolin
Chen, Xiaoming
Li, Dazhuang
Zhang, Ping
Yu, Daojiang
author_facet Su, Wenxing
Li, Wei
Zhang, Yuanyuan
Wang, Kuan
Chen, Maolin
Chen, Xiaoming
Li, Dazhuang
Zhang, Ping
Yu, Daojiang
author_sort Su, Wenxing
collection PubMed
description Severe burns often have a high mortality rate due to sepsis, but the genetic and immune crosstalk between them remains unclear. In the present study, the GSE77791 and GSE95233 datasets were analysed to identify immune‐related differentially expressed genes (DEGs) involved in disease progression in both burns and sepsis. Subsequently, weighted gene coexpression network analysis (WGCNA), gene enrichment analysis, protein–protein interaction (PPI) network construction, immune cell infiltration analysis, core gene identification, coexpression network analysis and clinical correlation analysis were performed. A total of 282 common DEGs associated with burns and sepsis were identified. Kyoto Encyclopedia of Genes and Genomes pathway analysis identified the following enriched pathways in burns and sepsis: metabolic pathways; complement and coagulation cascades; legionellosis; starch and sucrose metabolism; and ferroptosis. Finally, six core DEGs were identified, namely, IL10, RETN, THBS1, FGF13, LCN2 and MMP9. Correlation analysis showed that some core DEGs were significantly associated with simultaneous dysregulation of immune cells. Of these, RETN upregulation was associated with a worse prognosis. The immune‐related genes and dysregulated immune cells in severe burns and sepsis provide potential research directions for diagnosis and treatment.
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spelling pubmed-102431592023-06-07 Screening and identification of the core immune‐related genes and immune cell infiltration in severe burns and sepsis Su, Wenxing Li, Wei Zhang, Yuanyuan Wang, Kuan Chen, Maolin Chen, Xiaoming Li, Dazhuang Zhang, Ping Yu, Daojiang J Cell Mol Med Original Articles Severe burns often have a high mortality rate due to sepsis, but the genetic and immune crosstalk between them remains unclear. In the present study, the GSE77791 and GSE95233 datasets were analysed to identify immune‐related differentially expressed genes (DEGs) involved in disease progression in both burns and sepsis. Subsequently, weighted gene coexpression network analysis (WGCNA), gene enrichment analysis, protein–protein interaction (PPI) network construction, immune cell infiltration analysis, core gene identification, coexpression network analysis and clinical correlation analysis were performed. A total of 282 common DEGs associated with burns and sepsis were identified. Kyoto Encyclopedia of Genes and Genomes pathway analysis identified the following enriched pathways in burns and sepsis: metabolic pathways; complement and coagulation cascades; legionellosis; starch and sucrose metabolism; and ferroptosis. Finally, six core DEGs were identified, namely, IL10, RETN, THBS1, FGF13, LCN2 and MMP9. Correlation analysis showed that some core DEGs were significantly associated with simultaneous dysregulation of immune cells. Of these, RETN upregulation was associated with a worse prognosis. The immune‐related genes and dysregulated immune cells in severe burns and sepsis provide potential research directions for diagnosis and treatment. John Wiley and Sons Inc. 2023-04-15 /pmc/articles/PMC10243159/ /pubmed/37060578 http://dx.doi.org/10.1111/jcmm.17749 Text en © 2023 The Authors. Journal of Cellular and Molecular Medicine published by Foundation for Cellular and Molecular Medicine and John Wiley & Sons Ltd. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Original Articles
Su, Wenxing
Li, Wei
Zhang, Yuanyuan
Wang, Kuan
Chen, Maolin
Chen, Xiaoming
Li, Dazhuang
Zhang, Ping
Yu, Daojiang
Screening and identification of the core immune‐related genes and immune cell infiltration in severe burns and sepsis
title Screening and identification of the core immune‐related genes and immune cell infiltration in severe burns and sepsis
title_full Screening and identification of the core immune‐related genes and immune cell infiltration in severe burns and sepsis
title_fullStr Screening and identification of the core immune‐related genes and immune cell infiltration in severe burns and sepsis
title_full_unstemmed Screening and identification of the core immune‐related genes and immune cell infiltration in severe burns and sepsis
title_short Screening and identification of the core immune‐related genes and immune cell infiltration in severe burns and sepsis
title_sort screening and identification of the core immune‐related genes and immune cell infiltration in severe burns and sepsis
topic Original Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10243159/
https://www.ncbi.nlm.nih.gov/pubmed/37060578
http://dx.doi.org/10.1111/jcmm.17749
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