Cargando…

DARU‐Net: A dual attention residual U‐Net for uterine fibroids segmentation on MRI

PURPOSE: Uterine fibroid is the most common benign tumor in female reproductive organs. In order to guide the treatment, it is crucial to detect the location, shape, and size of the tumor. This study proposed a deep learning approach based on attention mechanisms to segment uterine fibroids automati...

Descripción completa

Detalles Bibliográficos
Autores principales: Zhang, Jian, Liu, Yang, Chen, Liping, Ma, Si, Zhong, Yuqing, He, Zhimin, Li, Chengwei, Xiao, Zhibo, Zheng, Yineng, Lv, Fajin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10243339/
https://www.ncbi.nlm.nih.gov/pubmed/36992637
http://dx.doi.org/10.1002/acm2.13937
_version_ 1785054407066386432
author Zhang, Jian
Liu, Yang
Chen, Liping
Ma, Si
Zhong, Yuqing
He, Zhimin
Li, Chengwei
Xiao, Zhibo
Zheng, Yineng
Lv, Fajin
author_facet Zhang, Jian
Liu, Yang
Chen, Liping
Ma, Si
Zhong, Yuqing
He, Zhimin
Li, Chengwei
Xiao, Zhibo
Zheng, Yineng
Lv, Fajin
author_sort Zhang, Jian
collection PubMed
description PURPOSE: Uterine fibroid is the most common benign tumor in female reproductive organs. In order to guide the treatment, it is crucial to detect the location, shape, and size of the tumor. This study proposed a deep learning approach based on attention mechanisms to segment uterine fibroids automatically on preoperative Magnetic Resonance (MR) images. METHODS: The proposed method is based on U‐Net architecture and integrates two attention mechanisms: channel attention of squeeze‐and‐excitation (SE) blocks with residual connections, spatial attention of pyramid pooling module (PPM). We did the ablation study to verify the performance of these two attention mechanisms module and compared DARU‐Net with other deep learning methods. All experiments were performed on a clinical dataset consisting of 150 cases collected from our hospital. Among them, 120 cases were used as the training set, and 30 cases are used as the test set. After preprocessing and data augmentation, we trained the network and tested it on the test dataset. We evaluated segmentation performance through the Dice similarity coefficient (DSC), precision, recall, and Jaccard index (JI). RESULTS: The average DSC, precision, recall, and JI of DARU‐Net reached 0.8066 ± 0.0956, 0.8233 ± 0.1255, 0.7913 ± 0.1304, and 0.6743 ± 0.1317. Compared with U‐Net and other deep learning methods, DARU‐Net was more accurate and stable. CONCLUSION: This work proposed an optimized U‐Net with channel and spatial attention mechanisms to segment uterine fibroids on preoperative MR images. Results showed that DARU‐Net was able to accurately segment uterine fibroids from MR images.
format Online
Article
Text
id pubmed-10243339
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-102433392023-06-07 DARU‐Net: A dual attention residual U‐Net for uterine fibroids segmentation on MRI Zhang, Jian Liu, Yang Chen, Liping Ma, Si Zhong, Yuqing He, Zhimin Li, Chengwei Xiao, Zhibo Zheng, Yineng Lv, Fajin J Appl Clin Med Phys Radiation Oncology Physics PURPOSE: Uterine fibroid is the most common benign tumor in female reproductive organs. In order to guide the treatment, it is crucial to detect the location, shape, and size of the tumor. This study proposed a deep learning approach based on attention mechanisms to segment uterine fibroids automatically on preoperative Magnetic Resonance (MR) images. METHODS: The proposed method is based on U‐Net architecture and integrates two attention mechanisms: channel attention of squeeze‐and‐excitation (SE) blocks with residual connections, spatial attention of pyramid pooling module (PPM). We did the ablation study to verify the performance of these two attention mechanisms module and compared DARU‐Net with other deep learning methods. All experiments were performed on a clinical dataset consisting of 150 cases collected from our hospital. Among them, 120 cases were used as the training set, and 30 cases are used as the test set. After preprocessing and data augmentation, we trained the network and tested it on the test dataset. We evaluated segmentation performance through the Dice similarity coefficient (DSC), precision, recall, and Jaccard index (JI). RESULTS: The average DSC, precision, recall, and JI of DARU‐Net reached 0.8066 ± 0.0956, 0.8233 ± 0.1255, 0.7913 ± 0.1304, and 0.6743 ± 0.1317. Compared with U‐Net and other deep learning methods, DARU‐Net was more accurate and stable. CONCLUSION: This work proposed an optimized U‐Net with channel and spatial attention mechanisms to segment uterine fibroids on preoperative MR images. Results showed that DARU‐Net was able to accurately segment uterine fibroids from MR images. John Wiley and Sons Inc. 2023-03-29 /pmc/articles/PMC10243339/ /pubmed/36992637 http://dx.doi.org/10.1002/acm2.13937 Text en © 2023 The Authors. Journal of Applied Clinical Medical Physics published by Wiley Periodicals, LLC on behalf of The American Association of Physicists in Medicine. https://creativecommons.org/licenses/by/4.0/This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Radiation Oncology Physics
Zhang, Jian
Liu, Yang
Chen, Liping
Ma, Si
Zhong, Yuqing
He, Zhimin
Li, Chengwei
Xiao, Zhibo
Zheng, Yineng
Lv, Fajin
DARU‐Net: A dual attention residual U‐Net for uterine fibroids segmentation on MRI
title DARU‐Net: A dual attention residual U‐Net for uterine fibroids segmentation on MRI
title_full DARU‐Net: A dual attention residual U‐Net for uterine fibroids segmentation on MRI
title_fullStr DARU‐Net: A dual attention residual U‐Net for uterine fibroids segmentation on MRI
title_full_unstemmed DARU‐Net: A dual attention residual U‐Net for uterine fibroids segmentation on MRI
title_short DARU‐Net: A dual attention residual U‐Net for uterine fibroids segmentation on MRI
title_sort daru‐net: a dual attention residual u‐net for uterine fibroids segmentation on mri
topic Radiation Oncology Physics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10243339/
https://www.ncbi.nlm.nih.gov/pubmed/36992637
http://dx.doi.org/10.1002/acm2.13937
work_keys_str_mv AT zhangjian darunetadualattentionresidualunetforuterinefibroidssegmentationonmri
AT liuyang darunetadualattentionresidualunetforuterinefibroidssegmentationonmri
AT chenliping darunetadualattentionresidualunetforuterinefibroidssegmentationonmri
AT masi darunetadualattentionresidualunetforuterinefibroidssegmentationonmri
AT zhongyuqing darunetadualattentionresidualunetforuterinefibroidssegmentationonmri
AT hezhimin darunetadualattentionresidualunetforuterinefibroidssegmentationonmri
AT lichengwei darunetadualattentionresidualunetforuterinefibroidssegmentationonmri
AT xiaozhibo darunetadualattentionresidualunetforuterinefibroidssegmentationonmri
AT zhengyineng darunetadualattentionresidualunetforuterinefibroidssegmentationonmri
AT lvfajin darunetadualattentionresidualunetforuterinefibroidssegmentationonmri