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From Leiden to Tel-Aviv University (TAU): exploring clustering solutions via a genetic algorithm

Graph clustering is a fundamental problem in machine learning with numerous applications in data science. State-of-the-art approaches to the problem, Louvain and Leiden, aim at optimizing the modularity function. However, their greedy nature leads to fast convergence to sub-optimal solutions. Here,...

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Detalles Bibliográficos
Autores principales: Gilad, Gal, Sharan, Roded
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10244004/
https://www.ncbi.nlm.nih.gov/pubmed/37287709
http://dx.doi.org/10.1093/pnasnexus/pgad180
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author Gilad, Gal
Sharan, Roded
author_facet Gilad, Gal
Sharan, Roded
author_sort Gilad, Gal
collection PubMed
description Graph clustering is a fundamental problem in machine learning with numerous applications in data science. State-of-the-art approaches to the problem, Louvain and Leiden, aim at optimizing the modularity function. However, their greedy nature leads to fast convergence to sub-optimal solutions. Here, we design a new approach to graph clustering, Tel-Aviv University (TAU), that efficiently explores the solution space using a genetic algorithm. We benchmark TAU on synthetic and real data sets and show its superiority over previous methods both in terms of the modularity of the computed solution and its similarity to a ground-truth partition when such exists. TAU is available at https://github.com/GalGilad/TAU.
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spelling pubmed-102440042023-06-07 From Leiden to Tel-Aviv University (TAU): exploring clustering solutions via a genetic algorithm Gilad, Gal Sharan, Roded PNAS Nexus Physical Sciences and Engineering Graph clustering is a fundamental problem in machine learning with numerous applications in data science. State-of-the-art approaches to the problem, Louvain and Leiden, aim at optimizing the modularity function. However, their greedy nature leads to fast convergence to sub-optimal solutions. Here, we design a new approach to graph clustering, Tel-Aviv University (TAU), that efficiently explores the solution space using a genetic algorithm. We benchmark TAU on synthetic and real data sets and show its superiority over previous methods both in terms of the modularity of the computed solution and its similarity to a ground-truth partition when such exists. TAU is available at https://github.com/GalGilad/TAU. Oxford University Press 2023-06-01 /pmc/articles/PMC10244004/ /pubmed/37287709 http://dx.doi.org/10.1093/pnasnexus/pgad180 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of National Academy of Sciences. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Physical Sciences and Engineering
Gilad, Gal
Sharan, Roded
From Leiden to Tel-Aviv University (TAU): exploring clustering solutions via a genetic algorithm
title From Leiden to Tel-Aviv University (TAU): exploring clustering solutions via a genetic algorithm
title_full From Leiden to Tel-Aviv University (TAU): exploring clustering solutions via a genetic algorithm
title_fullStr From Leiden to Tel-Aviv University (TAU): exploring clustering solutions via a genetic algorithm
title_full_unstemmed From Leiden to Tel-Aviv University (TAU): exploring clustering solutions via a genetic algorithm
title_short From Leiden to Tel-Aviv University (TAU): exploring clustering solutions via a genetic algorithm
title_sort from leiden to tel-aviv university (tau): exploring clustering solutions via a genetic algorithm
topic Physical Sciences and Engineering
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10244004/
https://www.ncbi.nlm.nih.gov/pubmed/37287709
http://dx.doi.org/10.1093/pnasnexus/pgad180
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