Cargando…
From Leiden to Tel-Aviv University (TAU): exploring clustering solutions via a genetic algorithm
Graph clustering is a fundamental problem in machine learning with numerous applications in data science. State-of-the-art approaches to the problem, Louvain and Leiden, aim at optimizing the modularity function. However, their greedy nature leads to fast convergence to sub-optimal solutions. Here,...
Autores principales: | , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10244004/ https://www.ncbi.nlm.nih.gov/pubmed/37287709 http://dx.doi.org/10.1093/pnasnexus/pgad180 |
_version_ | 1785054547613319168 |
---|---|
author | Gilad, Gal Sharan, Roded |
author_facet | Gilad, Gal Sharan, Roded |
author_sort | Gilad, Gal |
collection | PubMed |
description | Graph clustering is a fundamental problem in machine learning with numerous applications in data science. State-of-the-art approaches to the problem, Louvain and Leiden, aim at optimizing the modularity function. However, their greedy nature leads to fast convergence to sub-optimal solutions. Here, we design a new approach to graph clustering, Tel-Aviv University (TAU), that efficiently explores the solution space using a genetic algorithm. We benchmark TAU on synthetic and real data sets and show its superiority over previous methods both in terms of the modularity of the computed solution and its similarity to a ground-truth partition when such exists. TAU is available at https://github.com/GalGilad/TAU. |
format | Online Article Text |
id | pubmed-10244004 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-102440042023-06-07 From Leiden to Tel-Aviv University (TAU): exploring clustering solutions via a genetic algorithm Gilad, Gal Sharan, Roded PNAS Nexus Physical Sciences and Engineering Graph clustering is a fundamental problem in machine learning with numerous applications in data science. State-of-the-art approaches to the problem, Louvain and Leiden, aim at optimizing the modularity function. However, their greedy nature leads to fast convergence to sub-optimal solutions. Here, we design a new approach to graph clustering, Tel-Aviv University (TAU), that efficiently explores the solution space using a genetic algorithm. We benchmark TAU on synthetic and real data sets and show its superiority over previous methods both in terms of the modularity of the computed solution and its similarity to a ground-truth partition when such exists. TAU is available at https://github.com/GalGilad/TAU. Oxford University Press 2023-06-01 /pmc/articles/PMC10244004/ /pubmed/37287709 http://dx.doi.org/10.1093/pnasnexus/pgad180 Text en © The Author(s) 2023. Published by Oxford University Press on behalf of National Academy of Sciences. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Physical Sciences and Engineering Gilad, Gal Sharan, Roded From Leiden to Tel-Aviv University (TAU): exploring clustering solutions via a genetic algorithm |
title | From Leiden to Tel-Aviv University (TAU): exploring clustering solutions via a genetic algorithm |
title_full | From Leiden to Tel-Aviv University (TAU): exploring clustering solutions via a genetic algorithm |
title_fullStr | From Leiden to Tel-Aviv University (TAU): exploring clustering solutions via a genetic algorithm |
title_full_unstemmed | From Leiden to Tel-Aviv University (TAU): exploring clustering solutions via a genetic algorithm |
title_short | From Leiden to Tel-Aviv University (TAU): exploring clustering solutions via a genetic algorithm |
title_sort | from leiden to tel-aviv university (tau): exploring clustering solutions via a genetic algorithm |
topic | Physical Sciences and Engineering |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10244004/ https://www.ncbi.nlm.nih.gov/pubmed/37287709 http://dx.doi.org/10.1093/pnasnexus/pgad180 |
work_keys_str_mv | AT giladgal fromleidentotelavivuniversitytauexploringclusteringsolutionsviaageneticalgorithm AT sharanroded fromleidentotelavivuniversitytauexploringclusteringsolutionsviaageneticalgorithm |