Cargando…

Robbsia betulipollinis sp. nov., Isolated from Pollen of Birch (Betula pendula)

One gram-negative strain designated Bb-Pol-6( T) was isolated from birch (Betula pendula) pollen at Giessen area, Germany. The analysis of 16S rRNA gene-based phylogenies indicated the next-relative genera were Robbsia, Chitinasiproducens, Pararobbsia and Paraburkholderia (96–95.6%). Further compara...

Descripción completa

Detalles Bibliográficos
Autores principales: Shi, Haoran, Ambika Manirajan, Binoy, Ratering, Stefan, Geissler-Plaum, Rita, Schnell, Sylvia
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10244264/
https://www.ncbi.nlm.nih.gov/pubmed/37278851
http://dx.doi.org/10.1007/s00284-023-03344-7
_version_ 1785054599050166272
author Shi, Haoran
Ambika Manirajan, Binoy
Ratering, Stefan
Geissler-Plaum, Rita
Schnell, Sylvia
author_facet Shi, Haoran
Ambika Manirajan, Binoy
Ratering, Stefan
Geissler-Plaum, Rita
Schnell, Sylvia
author_sort Shi, Haoran
collection PubMed
description One gram-negative strain designated Bb-Pol-6( T) was isolated from birch (Betula pendula) pollen at Giessen area, Germany. The analysis of 16S rRNA gene-based phylogenies indicated the next-relative genera were Robbsia, Chitinasiproducens, Pararobbsia and Paraburkholderia (96–95.6%). Further comparative genome analysis and phylogenetic tree-based methods revealed its phylogenetic position under the genus Robbsia. The genome of strain Bb-Pol-6( T) was 5.04 Mbp with 4401 predicted coding sequences and a G + C content of 65.31 mol%. Average amino acid identity, average nucleotide identity, digital DNA–DNA hybridization and percentage of conserved proteins values to Robbsia andropogonis DSM 9511( T) were 68.0, 72.5, 22.7 and 65.85%, respectively. Strain Bb-Pol-6( T) was rod-shaped, non-motile, facultative anaerobic and grew optimally at 28 °C and pH 6–7. Ubiquinone 8 was the major respiratory quinone and the major cellular fatty acids were C(16:0), C(19:0 cyclo) ω7c, C(17:0 cyclo) ω7c and C(17:1) ω6c. The dominant polar lipids were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol and an unidentified aminophospholipid. Based on the genomic physiological and phenotypic characteristics, strain Bb-Pol-6( T) was considered a novel species under the genus Robbsia, for which the name Robbsia betulipollinis sp. nov. was proposed. The type strain is Bb-Pol-6( T) (= LMG 32774( T) = DSM 114812( T)). SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00284-023-03344-7.
format Online
Article
Text
id pubmed-10244264
institution National Center for Biotechnology Information
language English
publishDate 2023
publisher Springer US
record_format MEDLINE/PubMed
spelling pubmed-102442642023-06-08 Robbsia betulipollinis sp. nov., Isolated from Pollen of Birch (Betula pendula) Shi, Haoran Ambika Manirajan, Binoy Ratering, Stefan Geissler-Plaum, Rita Schnell, Sylvia Curr Microbiol Article One gram-negative strain designated Bb-Pol-6( T) was isolated from birch (Betula pendula) pollen at Giessen area, Germany. The analysis of 16S rRNA gene-based phylogenies indicated the next-relative genera were Robbsia, Chitinasiproducens, Pararobbsia and Paraburkholderia (96–95.6%). Further comparative genome analysis and phylogenetic tree-based methods revealed its phylogenetic position under the genus Robbsia. The genome of strain Bb-Pol-6( T) was 5.04 Mbp with 4401 predicted coding sequences and a G + C content of 65.31 mol%. Average amino acid identity, average nucleotide identity, digital DNA–DNA hybridization and percentage of conserved proteins values to Robbsia andropogonis DSM 9511( T) were 68.0, 72.5, 22.7 and 65.85%, respectively. Strain Bb-Pol-6( T) was rod-shaped, non-motile, facultative anaerobic and grew optimally at 28 °C and pH 6–7. Ubiquinone 8 was the major respiratory quinone and the major cellular fatty acids were C(16:0), C(19:0 cyclo) ω7c, C(17:0 cyclo) ω7c and C(17:1) ω6c. The dominant polar lipids were diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol and an unidentified aminophospholipid. Based on the genomic physiological and phenotypic characteristics, strain Bb-Pol-6( T) was considered a novel species under the genus Robbsia, for which the name Robbsia betulipollinis sp. nov. was proposed. The type strain is Bb-Pol-6( T) (= LMG 32774( T) = DSM 114812( T)). SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1007/s00284-023-03344-7. Springer US 2023-06-06 2023 /pmc/articles/PMC10244264/ /pubmed/37278851 http://dx.doi.org/10.1007/s00284-023-03344-7 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Shi, Haoran
Ambika Manirajan, Binoy
Ratering, Stefan
Geissler-Plaum, Rita
Schnell, Sylvia
Robbsia betulipollinis sp. nov., Isolated from Pollen of Birch (Betula pendula)
title Robbsia betulipollinis sp. nov., Isolated from Pollen of Birch (Betula pendula)
title_full Robbsia betulipollinis sp. nov., Isolated from Pollen of Birch (Betula pendula)
title_fullStr Robbsia betulipollinis sp. nov., Isolated from Pollen of Birch (Betula pendula)
title_full_unstemmed Robbsia betulipollinis sp. nov., Isolated from Pollen of Birch (Betula pendula)
title_short Robbsia betulipollinis sp. nov., Isolated from Pollen of Birch (Betula pendula)
title_sort robbsia betulipollinis sp. nov., isolated from pollen of birch (betula pendula)
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10244264/
https://www.ncbi.nlm.nih.gov/pubmed/37278851
http://dx.doi.org/10.1007/s00284-023-03344-7
work_keys_str_mv AT shihaoran robbsiabetulipollinisspnovisolatedfrompollenofbirchbetulapendula
AT ambikamanirajanbinoy robbsiabetulipollinisspnovisolatedfrompollenofbirchbetulapendula
AT rateringstefan robbsiabetulipollinisspnovisolatedfrompollenofbirchbetulapendula
AT geisslerplaumrita robbsiabetulipollinisspnovisolatedfrompollenofbirchbetulapendula
AT schnellsylvia robbsiabetulipollinisspnovisolatedfrompollenofbirchbetulapendula