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Taxonomy of Hyphodermella: a case study to show that simple phylogenies cannot always accurately place species in appropriate genera
The genus is a special and crucial taxonomic rank compared with others above the species level, because a species has to be placed in a certain genus instead of any other higher ranks. With more and more new species being described, the placements of their generic position are sometimes incorrect du...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10245440/ https://www.ncbi.nlm.nih.gov/pubmed/37280628 http://dx.doi.org/10.1186/s43008-023-00116-7 |
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author | Shen, Shan Liu, Shi-Liang Zhou, Li-Wei |
author_facet | Shen, Shan Liu, Shi-Liang Zhou, Li-Wei |
author_sort | Shen, Shan |
collection | PubMed |
description | The genus is a special and crucial taxonomic rank compared with others above the species level, because a species has to be placed in a certain genus instead of any other higher ranks. With more and more new species being described, the placements of their generic position are sometimes incorrect due to the simple phylogenies resulting from inappropriate sampling. Here, we focus on the taxonomy of a small wood-inhabiting fungal genus Hyphodermella. With the most comprehensive sampling to date, the phylogenetic position of Hyphodermella within Phanerochaetaceae is rearranged by employing the same ITS and nLSU regions as in previous studies and also the ITS, nLSU, rpb1, rpb2 and tef1α regions. Three species are excluded from Hyphodermella: H. poroides is placed in a newly introduced monotypic genus Pseudohyphodermella, while H. aurantiaca and H. zixishanensis are transferred to Roseograndinia. Hyphodermella suiae is described as a new species from South China and Vietnam. Keys to eight species in Hyphodermella and five in Roseograndinia are provided. Beyond solving the taxonomic issue of Hyphodermella itself, the current study also aims to suggest that all fungal taxonomists especially beginners should keep in mind to sample as many comprehensive taxa as possible in phylogenetic analyses. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s43008-023-00116-7. |
format | Online Article Text |
id | pubmed-10245440 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-102454402023-06-08 Taxonomy of Hyphodermella: a case study to show that simple phylogenies cannot always accurately place species in appropriate genera Shen, Shan Liu, Shi-Liang Zhou, Li-Wei IMA Fungus Research The genus is a special and crucial taxonomic rank compared with others above the species level, because a species has to be placed in a certain genus instead of any other higher ranks. With more and more new species being described, the placements of their generic position are sometimes incorrect due to the simple phylogenies resulting from inappropriate sampling. Here, we focus on the taxonomy of a small wood-inhabiting fungal genus Hyphodermella. With the most comprehensive sampling to date, the phylogenetic position of Hyphodermella within Phanerochaetaceae is rearranged by employing the same ITS and nLSU regions as in previous studies and also the ITS, nLSU, rpb1, rpb2 and tef1α regions. Three species are excluded from Hyphodermella: H. poroides is placed in a newly introduced monotypic genus Pseudohyphodermella, while H. aurantiaca and H. zixishanensis are transferred to Roseograndinia. Hyphodermella suiae is described as a new species from South China and Vietnam. Keys to eight species in Hyphodermella and five in Roseograndinia are provided. Beyond solving the taxonomic issue of Hyphodermella itself, the current study also aims to suggest that all fungal taxonomists especially beginners should keep in mind to sample as many comprehensive taxa as possible in phylogenetic analyses. SUPPLEMENTARY INFORMATION: The online version contains supplementary material available at 10.1186/s43008-023-00116-7. BioMed Central 2023-06-06 /pmc/articles/PMC10245440/ /pubmed/37280628 http://dx.doi.org/10.1186/s43008-023-00116-7 Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) . |
spellingShingle | Research Shen, Shan Liu, Shi-Liang Zhou, Li-Wei Taxonomy of Hyphodermella: a case study to show that simple phylogenies cannot always accurately place species in appropriate genera |
title | Taxonomy of Hyphodermella: a case study to show that simple phylogenies cannot always accurately place species in appropriate genera |
title_full | Taxonomy of Hyphodermella: a case study to show that simple phylogenies cannot always accurately place species in appropriate genera |
title_fullStr | Taxonomy of Hyphodermella: a case study to show that simple phylogenies cannot always accurately place species in appropriate genera |
title_full_unstemmed | Taxonomy of Hyphodermella: a case study to show that simple phylogenies cannot always accurately place species in appropriate genera |
title_short | Taxonomy of Hyphodermella: a case study to show that simple phylogenies cannot always accurately place species in appropriate genera |
title_sort | taxonomy of hyphodermella: a case study to show that simple phylogenies cannot always accurately place species in appropriate genera |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10245440/ https://www.ncbi.nlm.nih.gov/pubmed/37280628 http://dx.doi.org/10.1186/s43008-023-00116-7 |
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