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GIL: a python package for designing custom indexing primers
SUMMARY: Generate Indexes for Libraries (GIL) is a software tool for generating primers to be used in the production of multiplexed sequencing libraries. GIL can be customized in numerous ways to meet user specifications, including length, sequencing modality, color balancing, and compatibility with...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2023
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10246578/ https://www.ncbi.nlm.nih.gov/pubmed/37208164 http://dx.doi.org/10.1093/bioinformatics/btad328 |
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author | Mateyko, Nicholas Tariq, Omar Chen, Xinyi E Cheney, Will Salaudeen, Asfar Lathif Luthra, Ishika Nikpour, Najmeh Rafi, Abdul Muntakim Kamali Deghan, Hadis Jensen, Cassandra de Boer, Carl |
author_facet | Mateyko, Nicholas Tariq, Omar Chen, Xinyi E Cheney, Will Salaudeen, Asfar Lathif Luthra, Ishika Nikpour, Najmeh Rafi, Abdul Muntakim Kamali Deghan, Hadis Jensen, Cassandra de Boer, Carl |
author_sort | Mateyko, Nicholas |
collection | PubMed |
description | SUMMARY: Generate Indexes for Libraries (GIL) is a software tool for generating primers to be used in the production of multiplexed sequencing libraries. GIL can be customized in numerous ways to meet user specifications, including length, sequencing modality, color balancing, and compatibility with existing primers, and produces ordering and demultiplexing-ready outputs. AVAILABILITY AND IMPLEMENTATION: GIL is written in Python and is freely available on GitHub under the MIT license: https://github.com/de-Boer-Lab/GIL and can be accessed as a web-application implemented in Streamlit at https://dbl-gil.streamlitapp.com. |
format | Online Article Text |
id | pubmed-10246578 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-102465782023-06-08 GIL: a python package for designing custom indexing primers Mateyko, Nicholas Tariq, Omar Chen, Xinyi E Cheney, Will Salaudeen, Asfar Lathif Luthra, Ishika Nikpour, Najmeh Rafi, Abdul Muntakim Kamali Deghan, Hadis Jensen, Cassandra de Boer, Carl Bioinformatics Applications Note SUMMARY: Generate Indexes for Libraries (GIL) is a software tool for generating primers to be used in the production of multiplexed sequencing libraries. GIL can be customized in numerous ways to meet user specifications, including length, sequencing modality, color balancing, and compatibility with existing primers, and produces ordering and demultiplexing-ready outputs. AVAILABILITY AND IMPLEMENTATION: GIL is written in Python and is freely available on GitHub under the MIT license: https://github.com/de-Boer-Lab/GIL and can be accessed as a web-application implemented in Streamlit at https://dbl-gil.streamlitapp.com. Oxford University Press 2023-05-19 /pmc/articles/PMC10246578/ /pubmed/37208164 http://dx.doi.org/10.1093/bioinformatics/btad328 Text en © The Author(s) 2023. Published by Oxford University Press. https://creativecommons.org/licenses/by/4.0/This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Applications Note Mateyko, Nicholas Tariq, Omar Chen, Xinyi E Cheney, Will Salaudeen, Asfar Lathif Luthra, Ishika Nikpour, Najmeh Rafi, Abdul Muntakim Kamali Deghan, Hadis Jensen, Cassandra de Boer, Carl GIL: a python package for designing custom indexing primers |
title | GIL: a python package for designing custom indexing primers |
title_full | GIL: a python package for designing custom indexing primers |
title_fullStr | GIL: a python package for designing custom indexing primers |
title_full_unstemmed | GIL: a python package for designing custom indexing primers |
title_short | GIL: a python package for designing custom indexing primers |
title_sort | gil: a python package for designing custom indexing primers |
topic | Applications Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10246578/ https://www.ncbi.nlm.nih.gov/pubmed/37208164 http://dx.doi.org/10.1093/bioinformatics/btad328 |
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