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AI facilitated fluoro-electrochemical phytoplankton classification

Marine phytoplankton is extremely diverse. Counting and characterising phytoplankton is essential for understanding climate change and ocean health not least since phytoplankton extensively biomineralize carbon dioxide whilst generating 50% of the planet's oxygen. We report the use of fluoro-el...

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Autores principales: Chen, Haotian, Barton, Samuel, Yang, Minjun, Rickaby, Rosalind E. M., Bouman, Heather A., Compton, Richard G.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society of Chemistry 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10246652/
https://www.ncbi.nlm.nih.gov/pubmed/37293636
http://dx.doi.org/10.1039/d3sc01741a
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author Chen, Haotian
Barton, Samuel
Yang, Minjun
Rickaby, Rosalind E. M.
Bouman, Heather A.
Compton, Richard G.
author_facet Chen, Haotian
Barton, Samuel
Yang, Minjun
Rickaby, Rosalind E. M.
Bouman, Heather A.
Compton, Richard G.
author_sort Chen, Haotian
collection PubMed
description Marine phytoplankton is extremely diverse. Counting and characterising phytoplankton is essential for understanding climate change and ocean health not least since phytoplankton extensively biomineralize carbon dioxide whilst generating 50% of the planet's oxygen. We report the use of fluoro-electrochemical microscopy to distinguish different taxonomies of phytoplankton by the quenching of their chlorophyll-a fluorescence using chemical species oxidatively electrogenerated in situ in seawater. The rate of chlorophyll-a quenching of each cell is characteristic of the species-specific structural composition and cellular content. But with increasing diversity and extent of phytoplankton species under study, human interpretation and distinction of the resulting fluorescence transients becomes increasingly and prohibitively difficult. Thus, we further report a neural network to analyse these fluorescence transients, with an accuracy >95% classifying 29 phytoplankton strains to their taxonomic orders. This method transcends the state-of-the-art. The success of the fluoro-electrochemical microscopy combined with AI provides a novel, flexible and highly granular solution to phytoplankton classification and is adaptable for autonomous ocean monitoring.
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spelling pubmed-102466522023-06-08 AI facilitated fluoro-electrochemical phytoplankton classification Chen, Haotian Barton, Samuel Yang, Minjun Rickaby, Rosalind E. M. Bouman, Heather A. Compton, Richard G. Chem Sci Chemistry Marine phytoplankton is extremely diverse. Counting and characterising phytoplankton is essential for understanding climate change and ocean health not least since phytoplankton extensively biomineralize carbon dioxide whilst generating 50% of the planet's oxygen. We report the use of fluoro-electrochemical microscopy to distinguish different taxonomies of phytoplankton by the quenching of their chlorophyll-a fluorescence using chemical species oxidatively electrogenerated in situ in seawater. The rate of chlorophyll-a quenching of each cell is characteristic of the species-specific structural composition and cellular content. But with increasing diversity and extent of phytoplankton species under study, human interpretation and distinction of the resulting fluorescence transients becomes increasingly and prohibitively difficult. Thus, we further report a neural network to analyse these fluorescence transients, with an accuracy >95% classifying 29 phytoplankton strains to their taxonomic orders. This method transcends the state-of-the-art. The success of the fluoro-electrochemical microscopy combined with AI provides a novel, flexible and highly granular solution to phytoplankton classification and is adaptable for autonomous ocean monitoring. The Royal Society of Chemistry 2023-05-02 /pmc/articles/PMC10246652/ /pubmed/37293636 http://dx.doi.org/10.1039/d3sc01741a Text en This journal is © The Royal Society of Chemistry https://creativecommons.org/licenses/by-nc/3.0/
spellingShingle Chemistry
Chen, Haotian
Barton, Samuel
Yang, Minjun
Rickaby, Rosalind E. M.
Bouman, Heather A.
Compton, Richard G.
AI facilitated fluoro-electrochemical phytoplankton classification
title AI facilitated fluoro-electrochemical phytoplankton classification
title_full AI facilitated fluoro-electrochemical phytoplankton classification
title_fullStr AI facilitated fluoro-electrochemical phytoplankton classification
title_full_unstemmed AI facilitated fluoro-electrochemical phytoplankton classification
title_short AI facilitated fluoro-electrochemical phytoplankton classification
title_sort ai facilitated fluoro-electrochemical phytoplankton classification
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10246652/
https://www.ncbi.nlm.nih.gov/pubmed/37293636
http://dx.doi.org/10.1039/d3sc01741a
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