Cargando…
Multi-centric evaluation of Biomeme Franklin Mobile qPCR for rapid detection of Mycobacterium ulcerans in clinical specimens
The gold standard for detection of Mycobacterium ulcerans is PCR due to its high accuracy in confirmation of suspected cases. But the available PCR assays are designed for standard size thermocyclers which are immobile and suited for reference laboratories often located long distances from endemic c...
Autores principales: | , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2023
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10246808/ https://www.ncbi.nlm.nih.gov/pubmed/37228126 http://dx.doi.org/10.1371/journal.pntd.0011373 |
_version_ | 1785055106834628608 |
---|---|
author | Frimpong, Michael Frimpong, Venus Nana Boakyewaa Numfor, Hycenth Donkeng Donfack, Valerie Amedior, Jennifer Seyram Deegbe, Danielle Emefa Dadson, Baaba Ablordey, Anthony Eyangoh, Sara Phillips, Richard Odame Vedithi, Sundeep Chaitanya |
author_facet | Frimpong, Michael Frimpong, Venus Nana Boakyewaa Numfor, Hycenth Donkeng Donfack, Valerie Amedior, Jennifer Seyram Deegbe, Danielle Emefa Dadson, Baaba Ablordey, Anthony Eyangoh, Sara Phillips, Richard Odame Vedithi, Sundeep Chaitanya |
author_sort | Frimpong, Michael |
collection | PubMed |
description | The gold standard for detection of Mycobacterium ulcerans is PCR due to its high accuracy in confirmation of suspected cases. But the available PCR assays are designed for standard size thermocyclers which are immobile and suited for reference laboratories often located long distances from endemic communities. This makes it a challenge to obtain immediate results for patient management. We validated and evaluated a dried reagent-based PCR assay adapted for a handheld, battery-operated, portable thermocycler with the potential to extend diagnostics to endemic communities with limited infrastructure. The diagnostic accuracy of the assay following a multi-center evaluation by three Buruli ulcer reference laboratories with over 300 clinical samples showed sensitivity and specificity of 100–97% and 100–94%, respectively using centralized IS2404 quantitative PCR platform as a reference standard. This assay coupled with a field-friendly extraction method fulfill almost all the target product profiles of Buruli ulcer for decentralized testing at the district, health center and community levels; a key critical action for achieving the NTD Road Map 2030 target for Buruli ulcer. |
format | Online Article Text |
id | pubmed-10246808 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2023 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-102468082023-06-08 Multi-centric evaluation of Biomeme Franklin Mobile qPCR for rapid detection of Mycobacterium ulcerans in clinical specimens Frimpong, Michael Frimpong, Venus Nana Boakyewaa Numfor, Hycenth Donkeng Donfack, Valerie Amedior, Jennifer Seyram Deegbe, Danielle Emefa Dadson, Baaba Ablordey, Anthony Eyangoh, Sara Phillips, Richard Odame Vedithi, Sundeep Chaitanya PLoS Negl Trop Dis Research Article The gold standard for detection of Mycobacterium ulcerans is PCR due to its high accuracy in confirmation of suspected cases. But the available PCR assays are designed for standard size thermocyclers which are immobile and suited for reference laboratories often located long distances from endemic communities. This makes it a challenge to obtain immediate results for patient management. We validated and evaluated a dried reagent-based PCR assay adapted for a handheld, battery-operated, portable thermocycler with the potential to extend diagnostics to endemic communities with limited infrastructure. The diagnostic accuracy of the assay following a multi-center evaluation by three Buruli ulcer reference laboratories with over 300 clinical samples showed sensitivity and specificity of 100–97% and 100–94%, respectively using centralized IS2404 quantitative PCR platform as a reference standard. This assay coupled with a field-friendly extraction method fulfill almost all the target product profiles of Buruli ulcer for decentralized testing at the district, health center and community levels; a key critical action for achieving the NTD Road Map 2030 target for Buruli ulcer. Public Library of Science 2023-05-25 /pmc/articles/PMC10246808/ /pubmed/37228126 http://dx.doi.org/10.1371/journal.pntd.0011373 Text en © 2023 Frimpong et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Frimpong, Michael Frimpong, Venus Nana Boakyewaa Numfor, Hycenth Donkeng Donfack, Valerie Amedior, Jennifer Seyram Deegbe, Danielle Emefa Dadson, Baaba Ablordey, Anthony Eyangoh, Sara Phillips, Richard Odame Vedithi, Sundeep Chaitanya Multi-centric evaluation of Biomeme Franklin Mobile qPCR for rapid detection of Mycobacterium ulcerans in clinical specimens |
title | Multi-centric evaluation of Biomeme Franklin Mobile qPCR for rapid detection of Mycobacterium ulcerans in clinical specimens |
title_full | Multi-centric evaluation of Biomeme Franklin Mobile qPCR for rapid detection of Mycobacterium ulcerans in clinical specimens |
title_fullStr | Multi-centric evaluation of Biomeme Franklin Mobile qPCR for rapid detection of Mycobacterium ulcerans in clinical specimens |
title_full_unstemmed | Multi-centric evaluation of Biomeme Franklin Mobile qPCR for rapid detection of Mycobacterium ulcerans in clinical specimens |
title_short | Multi-centric evaluation of Biomeme Franklin Mobile qPCR for rapid detection of Mycobacterium ulcerans in clinical specimens |
title_sort | multi-centric evaluation of biomeme franklin mobile qpcr for rapid detection of mycobacterium ulcerans in clinical specimens |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10246808/ https://www.ncbi.nlm.nih.gov/pubmed/37228126 http://dx.doi.org/10.1371/journal.pntd.0011373 |
work_keys_str_mv | AT frimpongmichael multicentricevaluationofbiomemefranklinmobileqpcrforrapiddetectionofmycobacteriumulceransinclinicalspecimens AT frimpongvenusnanaboakyewaa multicentricevaluationofbiomemefranklinmobileqpcrforrapiddetectionofmycobacteriumulceransinclinicalspecimens AT numforhycenth multicentricevaluationofbiomemefranklinmobileqpcrforrapiddetectionofmycobacteriumulceransinclinicalspecimens AT donkengdonfackvalerie multicentricevaluationofbiomemefranklinmobileqpcrforrapiddetectionofmycobacteriumulceransinclinicalspecimens AT amediorjenniferseyram multicentricevaluationofbiomemefranklinmobileqpcrforrapiddetectionofmycobacteriumulceransinclinicalspecimens AT deegbedanielleemefa multicentricevaluationofbiomemefranklinmobileqpcrforrapiddetectionofmycobacteriumulceransinclinicalspecimens AT dadsonbaaba multicentricevaluationofbiomemefranklinmobileqpcrforrapiddetectionofmycobacteriumulceransinclinicalspecimens AT ablordeyanthony multicentricevaluationofbiomemefranklinmobileqpcrforrapiddetectionofmycobacteriumulceransinclinicalspecimens AT eyangohsara multicentricevaluationofbiomemefranklinmobileqpcrforrapiddetectionofmycobacteriumulceransinclinicalspecimens AT phillipsrichardodame multicentricevaluationofbiomemefranklinmobileqpcrforrapiddetectionofmycobacteriumulceransinclinicalspecimens AT vedithisundeepchaitanya multicentricevaluationofbiomemefranklinmobileqpcrforrapiddetectionofmycobacteriumulceransinclinicalspecimens |