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Multi-centric evaluation of Biomeme Franklin Mobile qPCR for rapid detection of Mycobacterium ulcerans in clinical specimens

The gold standard for detection of Mycobacterium ulcerans is PCR due to its high accuracy in confirmation of suspected cases. But the available PCR assays are designed for standard size thermocyclers which are immobile and suited for reference laboratories often located long distances from endemic c...

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Autores principales: Frimpong, Michael, Frimpong, Venus Nana Boakyewaa, Numfor, Hycenth, Donkeng Donfack, Valerie, Amedior, Jennifer Seyram, Deegbe, Danielle Emefa, Dadson, Baaba, Ablordey, Anthony, Eyangoh, Sara, Phillips, Richard Odame, Vedithi, Sundeep Chaitanya
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10246808/
https://www.ncbi.nlm.nih.gov/pubmed/37228126
http://dx.doi.org/10.1371/journal.pntd.0011373
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author Frimpong, Michael
Frimpong, Venus Nana Boakyewaa
Numfor, Hycenth
Donkeng Donfack, Valerie
Amedior, Jennifer Seyram
Deegbe, Danielle Emefa
Dadson, Baaba
Ablordey, Anthony
Eyangoh, Sara
Phillips, Richard Odame
Vedithi, Sundeep Chaitanya
author_facet Frimpong, Michael
Frimpong, Venus Nana Boakyewaa
Numfor, Hycenth
Donkeng Donfack, Valerie
Amedior, Jennifer Seyram
Deegbe, Danielle Emefa
Dadson, Baaba
Ablordey, Anthony
Eyangoh, Sara
Phillips, Richard Odame
Vedithi, Sundeep Chaitanya
author_sort Frimpong, Michael
collection PubMed
description The gold standard for detection of Mycobacterium ulcerans is PCR due to its high accuracy in confirmation of suspected cases. But the available PCR assays are designed for standard size thermocyclers which are immobile and suited for reference laboratories often located long distances from endemic communities. This makes it a challenge to obtain immediate results for patient management. We validated and evaluated a dried reagent-based PCR assay adapted for a handheld, battery-operated, portable thermocycler with the potential to extend diagnostics to endemic communities with limited infrastructure. The diagnostic accuracy of the assay following a multi-center evaluation by three Buruli ulcer reference laboratories with over 300 clinical samples showed sensitivity and specificity of 100–97% and 100–94%, respectively using centralized IS2404 quantitative PCR platform as a reference standard. This assay coupled with a field-friendly extraction method fulfill almost all the target product profiles of Buruli ulcer for decentralized testing at the district, health center and community levels; a key critical action for achieving the NTD Road Map 2030 target for Buruli ulcer.
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spelling pubmed-102468082023-06-08 Multi-centric evaluation of Biomeme Franklin Mobile qPCR for rapid detection of Mycobacterium ulcerans in clinical specimens Frimpong, Michael Frimpong, Venus Nana Boakyewaa Numfor, Hycenth Donkeng Donfack, Valerie Amedior, Jennifer Seyram Deegbe, Danielle Emefa Dadson, Baaba Ablordey, Anthony Eyangoh, Sara Phillips, Richard Odame Vedithi, Sundeep Chaitanya PLoS Negl Trop Dis Research Article The gold standard for detection of Mycobacterium ulcerans is PCR due to its high accuracy in confirmation of suspected cases. But the available PCR assays are designed for standard size thermocyclers which are immobile and suited for reference laboratories often located long distances from endemic communities. This makes it a challenge to obtain immediate results for patient management. We validated and evaluated a dried reagent-based PCR assay adapted for a handheld, battery-operated, portable thermocycler with the potential to extend diagnostics to endemic communities with limited infrastructure. The diagnostic accuracy of the assay following a multi-center evaluation by three Buruli ulcer reference laboratories with over 300 clinical samples showed sensitivity and specificity of 100–97% and 100–94%, respectively using centralized IS2404 quantitative PCR platform as a reference standard. This assay coupled with a field-friendly extraction method fulfill almost all the target product profiles of Buruli ulcer for decentralized testing at the district, health center and community levels; a key critical action for achieving the NTD Road Map 2030 target for Buruli ulcer. Public Library of Science 2023-05-25 /pmc/articles/PMC10246808/ /pubmed/37228126 http://dx.doi.org/10.1371/journal.pntd.0011373 Text en © 2023 Frimpong et al https://creativecommons.org/licenses/by/4.0/This is an open access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Frimpong, Michael
Frimpong, Venus Nana Boakyewaa
Numfor, Hycenth
Donkeng Donfack, Valerie
Amedior, Jennifer Seyram
Deegbe, Danielle Emefa
Dadson, Baaba
Ablordey, Anthony
Eyangoh, Sara
Phillips, Richard Odame
Vedithi, Sundeep Chaitanya
Multi-centric evaluation of Biomeme Franklin Mobile qPCR for rapid detection of Mycobacterium ulcerans in clinical specimens
title Multi-centric evaluation of Biomeme Franklin Mobile qPCR for rapid detection of Mycobacterium ulcerans in clinical specimens
title_full Multi-centric evaluation of Biomeme Franklin Mobile qPCR for rapid detection of Mycobacterium ulcerans in clinical specimens
title_fullStr Multi-centric evaluation of Biomeme Franklin Mobile qPCR for rapid detection of Mycobacterium ulcerans in clinical specimens
title_full_unstemmed Multi-centric evaluation of Biomeme Franklin Mobile qPCR for rapid detection of Mycobacterium ulcerans in clinical specimens
title_short Multi-centric evaluation of Biomeme Franklin Mobile qPCR for rapid detection of Mycobacterium ulcerans in clinical specimens
title_sort multi-centric evaluation of biomeme franklin mobile qpcr for rapid detection of mycobacterium ulcerans in clinical specimens
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10246808/
https://www.ncbi.nlm.nih.gov/pubmed/37228126
http://dx.doi.org/10.1371/journal.pntd.0011373
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