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Identification of immune-related gene signature for predicting prognosis in uterine corpus endometrial carcinoma

The objective of this study is to develop a gene signature related to the immune system that can be used to create personalized immunotherapy for Uterine Corpus Endometrial Carcinoma (UCEC). To classify the UCEC samples into different immune clusters, we utilized consensus clustering analysis. Addit...

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Autores principales: Song, Siyuan, Gu, Haoqing, Li, Jingzhan, Yang, Peipei, Qi, Xiafei, Liu, Jiatong, Zhou, Jiayu, Li, Ye, Shu, Peng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2023
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10247783/
https://www.ncbi.nlm.nih.gov/pubmed/37286702
http://dx.doi.org/10.1038/s41598-023-35655-x
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author Song, Siyuan
Gu, Haoqing
Li, Jingzhan
Yang, Peipei
Qi, Xiafei
Liu, Jiatong
Zhou, Jiayu
Li, Ye
Shu, Peng
author_facet Song, Siyuan
Gu, Haoqing
Li, Jingzhan
Yang, Peipei
Qi, Xiafei
Liu, Jiatong
Zhou, Jiayu
Li, Ye
Shu, Peng
author_sort Song, Siyuan
collection PubMed
description The objective of this study is to develop a gene signature related to the immune system that can be used to create personalized immunotherapy for Uterine Corpus Endometrial Carcinoma (UCEC). To classify the UCEC samples into different immune clusters, we utilized consensus clustering analysis. Additionally, immune correlation algorithms were employed to investigate the tumor immune microenvironment (TIME) in diverse clusters. To explore the biological function, we conducted GSEA analysis. Next, we developed a Nomogram by integrating a prognostic model with clinical features. Finally, we performed experimental validation in vitro to verify our prognostic risk model. In our study, we classified UCEC patients into three clusters using consensus clustering. We hypothesized that cluster C1 represents the immune inflammation type, cluster C2 represents the immune rejection type, and cluster C3 represents the immune desert type. The hub genes identified in the training cohort were primarily enriched in the MAPK signaling pathway, as well as the PD-L1 expression and PD-1 checkpoint pathway in cancer, all of which are immune-related pathways. Cluster C1 may be a more suitable for immunotherapy. The prognostic risk model showed a strong predictive ability. Our constructed risk model demonstrated a high level of accuracy in predicting the prognosis of UCEC, while also effectively reflecting the state of TIME.
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spelling pubmed-102477832023-06-09 Identification of immune-related gene signature for predicting prognosis in uterine corpus endometrial carcinoma Song, Siyuan Gu, Haoqing Li, Jingzhan Yang, Peipei Qi, Xiafei Liu, Jiatong Zhou, Jiayu Li, Ye Shu, Peng Sci Rep Article The objective of this study is to develop a gene signature related to the immune system that can be used to create personalized immunotherapy for Uterine Corpus Endometrial Carcinoma (UCEC). To classify the UCEC samples into different immune clusters, we utilized consensus clustering analysis. Additionally, immune correlation algorithms were employed to investigate the tumor immune microenvironment (TIME) in diverse clusters. To explore the biological function, we conducted GSEA analysis. Next, we developed a Nomogram by integrating a prognostic model with clinical features. Finally, we performed experimental validation in vitro to verify our prognostic risk model. In our study, we classified UCEC patients into three clusters using consensus clustering. We hypothesized that cluster C1 represents the immune inflammation type, cluster C2 represents the immune rejection type, and cluster C3 represents the immune desert type. The hub genes identified in the training cohort were primarily enriched in the MAPK signaling pathway, as well as the PD-L1 expression and PD-1 checkpoint pathway in cancer, all of which are immune-related pathways. Cluster C1 may be a more suitable for immunotherapy. The prognostic risk model showed a strong predictive ability. Our constructed risk model demonstrated a high level of accuracy in predicting the prognosis of UCEC, while also effectively reflecting the state of TIME. Nature Publishing Group UK 2023-06-07 /pmc/articles/PMC10247783/ /pubmed/37286702 http://dx.doi.org/10.1038/s41598-023-35655-x Text en © The Author(s) 2023 https://creativecommons.org/licenses/by/4.0/Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/ (https://creativecommons.org/licenses/by/4.0/) .
spellingShingle Article
Song, Siyuan
Gu, Haoqing
Li, Jingzhan
Yang, Peipei
Qi, Xiafei
Liu, Jiatong
Zhou, Jiayu
Li, Ye
Shu, Peng
Identification of immune-related gene signature for predicting prognosis in uterine corpus endometrial carcinoma
title Identification of immune-related gene signature for predicting prognosis in uterine corpus endometrial carcinoma
title_full Identification of immune-related gene signature for predicting prognosis in uterine corpus endometrial carcinoma
title_fullStr Identification of immune-related gene signature for predicting prognosis in uterine corpus endometrial carcinoma
title_full_unstemmed Identification of immune-related gene signature for predicting prognosis in uterine corpus endometrial carcinoma
title_short Identification of immune-related gene signature for predicting prognosis in uterine corpus endometrial carcinoma
title_sort identification of immune-related gene signature for predicting prognosis in uterine corpus endometrial carcinoma
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10247783/
https://www.ncbi.nlm.nih.gov/pubmed/37286702
http://dx.doi.org/10.1038/s41598-023-35655-x
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